RNA id: TU28146


Basic Information

Item Value
RNA id TU28146
length 3265
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G18879
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11021328 ~ 11096418 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttatttttcatacatattttatttcagccatCATCGCTCCAGCCTTTGAATCATCCTTTTTTATCATTCACATAATCATCCTgctaaaagtttgttttttttttggtctttttttaaattttgttttttgtttttgtttgttcagctGAAATGTTCTCTCGCCCTgactgcatttcatttttatcttgCTCTAAGTCTCAGCTTAATCTGaacatataaaaaagtaaaccttttcaaagaaaactaaaaaagcaaacaaacaaacaaacaaaaatatatccaGAAACTGTaataccatctcaaagaggatATACAATATTAACAACATTAATCATCAGTGTTTTGATGATATCCAACAGGTTGCTAGGTCAACATGTTTGTCATTAGTAGTGTTAGTATCGAGTTCATCGTCAGTTTTTTGTGTTGAGCATCACTTATTAAATTATCATTGCATCAAGTTGACATCATCCATGTTAATATAAGCATGCAAACACATTTCCTCAGGATCATTCAGAATTGCACTGACATAGAGACAGAGGAAAGAGGGGagacaaaacagagagaaaaaatatgGTCTTGGGTGAAGTGAAGCTTTTGTCAAAGTTTGTATTTTGTGGGAGCTGATgacggggtcagaggtcactcTATAGGGATCGGGCCTCCACAGTGTAAGATCTAAGGCAGCACAAGAGATGGGCCTGGAGACAGGAGCTGAAGACTGCGGGTCGATACCACATCCACGTGTATGACGGAATCAATGGCCTCTTAGAAAACAACAAGAGCTGATATACGATAACGGACTAAGGACTGAGCACACACcggcgagagtgtgtgtgtgcgtgcgtgcgtccAAGGCCCGGCATGTGATTAATaatggaaagagagaaaatatgaGCTCAGTGGGAAATAATTATACTGATGTAGATTTCAATAAGATGAGTGTTAGTGATTGGTAATGCAGTATTCCTCCATTGAGGGATGTGTGCGGTAGCATTGGCAGTGGTTGTACTGCGatattaaagagatagttcatcttaaattaaatgttctgCTATCGTTTATGCACCACCGTGacatttcaaacctgtgtggctttctttctttcttctgcgaaagatgatattttgaaggTAGCGGGGTccaaaaacagtatttaattgTATAAGGATTTTGTGAAGTAAAATTGATTTTGTGCGCTAGAaaagaaagccatacaggtttggaatggaacgagggtgagtaaaagacagatttttcatttctgggtgaattaTCCTTTTAATAGAGGCAGTGACCCTGGATATCAAGGGTATGTGAATTTAGCGCTTTGGCCACTATATTGCTTCCAACTAGAGAAGCAGTGACTTTACCGAAAGTatacaaaaaaagcatctgAAGTCAGTTTGTGATGTAAAATGATATCAGTAATCTTGTGgccataaaacaacaaaagagtgtCCCCCTCTTTGTCTCTGTTTGCAAGGAATGCTCAGACAGAAAAGATAGTCACATTAGCCAAAAGAGATGAAGAGAAccagtttgtcttttttttccccttttttcttttaaagacagTGAAAAACTTCCAACATTTTATTCCTCGACAGCTGTGGCCGCCAGCTTTGTCCCCTCGtacacacagagcacatttacaaaaaaagaaaagcacaccCAACACGAGAACACAGATCAGGCTAGGGACACGTTTCAGTGACGAGCTGGTTAGGGACACAACAGAGACAGGTCACTACCACATTCGACAGAGAACGACCGAAACGCGCGTCTGAGAAAAAGACCCTGTCCCTACCAAGTGCAACAGGTCCTAAACAAGAAATAGTTCCTCTAAGACACAGGACAGGAGACACTTGATTGTTCAAAACGAGATTTTCTCTGCGCAGGACACAGGACGGGAAGTGGAGACGTACACACGGGGTCACGGTGAACATATACCGACGCGGgcatacacgcgcacacacaaaccGACGAGCAAACGCATATCGACACAAAAAGAGCACTCCTACAAACACATAGAATAcatgggaggaaaaaaaagaggatgAATGTGTGCGTCTTTCCAAAGCAGTCCTCTCGGCAGAAGGATGATGGAGAGCACACACTTCCtcctttgaaattaaaaatgtctaagagaaaagaaaaaaaaaatcctggcgtggtataaaaataaaatactatggCCAGATCTTTTCCCCCTTAGGATATGTTTCCAGGAAGTGCACACAAATCCAAGGTCCGTCCCAGTTAGGGTCCTCTGGCAATATTTGAAATCAATGATAGCTCCCTTTGGAAGAGTTCTCAGTGGGATTCAGTCTGCCAGGGTGTCCATGTCAGGGAAACATATCCtcaaatcatttcatttagtaTCTGGTGGAACAAGAAAAATGACTGGACTCTAGTAAAcgcaggaaaaaaagaaaacactgccgATCTCAGTGAGCTCCAAGCAGAAggtgataaaaatgtaaaaggcaGAGGGACACATTTCAATACTGCACGACACAATTTGGCCAATGTATCCGTTCTTATTTCTCCTTCTCCAGATGGGCACGGTCATAAAGTAGTCCTCCTCTCCAGAGAAACAGGAAACAGTTGCAAGGATTCTTCATTGGCAGAGAAGACCACTCCGAGAACTTGCAGCTACTTGTCAGACTGAAAACACCTTGTAGAGATTTTCTATAGCTACACACAGACACCCGTACaaactcacatacacacatgcgctcacacatacacagaaacatTCGTGGTCCATAATCTATCAGGTCTCtcctgattattttttttttgttttttaagtaattaaaatctCTTCTTTTGTAGGCTCAGTttcaaataactaaataaaagttatcTATTTAAAGTGGGAATGTTTGTCATATTTCCCCTGAATAAATCATGACATATTTTGACTTCAACATCATTCCTGAAGCAAAACCATCCATGCCAGTTGTTTTGTTATGatttcatgtgtgtgtgaatatgtcagtttgtgtgtgtgtggagatgtatctgtgtgtgtgtgtgtgtgtgtgtgtgatttgtgtcCGGACTATTCTAGTTATTTTTCTCTATATTGTGTTGGGTCTGCAGGGTTGACTTAGAGGAATAACGCTACCACAAGCACAGTCTCTTCTCTGGTTCTTTCTTGATGAGTAATTATTCACAGGTGAAAAGAAAGAATGTATTTCTGTTGCTAAAAAGATAATGCTGACCTGAGgatgagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248664.1 lncRNA upstream 2626 11012209 ~ 11018702 (+) True LOC122333718
TU28072 lncRNA upstream 50864 10932371 ~ 10970464 (+) True G18824
TU28101 lncRNA upstream 100457 10920360 ~ 10920871 (+) True G18847
TU28076 lncRNA upstream 192493 10827078 ~ 10828835 (+) True G18828
TU28062 lncRNA upstream 208542 10811824 ~ 10812786 (+) False G18817
TU28177 lncRNA downstream 12330 11108748 ~ 11110425 (+) True G18903
XR_006249203.1 lncRNA downstream 65460 11161878 ~ 11162645 (+) False LOC122336295
TU28197 lncRNA downstream 65498 11161916 ~ 11162907 (+) True LOC122336295
TU28198 lncRNA downstream 65498 11161916 ~ 11162907 (+) False LOC122336295
XR_006249197.1 lncRNA downstream 65503 11161921 ~ 11162645 (+) False LOC122336295
XM_043231371.1 mRNA upstream 14694 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 14694 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA upstream 14694 10978149 ~ 11006634 (+) False mybpc2a
XM_043233932.1 mRNA upstream 66599 10948678 ~ 10954729 (+) True akt1s1
XM_043235139.1 mRNA upstream 135705 10874237 ~ 10885623 (+) True LOC122341641
XM_043235291.1 mRNA downstream 182319 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 208907 11305325 ~ 11308557 (+) True prf1.9
XM_043235879.1 mRNA downstream 212264 11308682 ~ 11313369 (+) True prf1.1
XM_043228831.1 mRNA downstream 237323 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 237324 11333742 ~ 11335780 (+) False LOC122331261
TU28036 other upstream 239475 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 239475 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 986861 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1221573 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1271448 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 65936 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 237341 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 272475 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 676783 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 676783 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile