RNA id: TU28166


Basic Information

Item Value
RNA id TU28166
length 1601
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G18894
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11077044 ~ 11078732 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttttcattaaaaagattattaaactataaaaaaaagacCCAACTCAAAAGACTCATTGATTGGAGAatgtttttcattctttttagcGAATCCAAAAAAATAGACCATGACCAGTGTACAGTAGTCCAATTACCCCCAAAAAAGGACTCTTTCAGTCGGCTCTTTTCAATTAATCATAACTATACAGTGTGGGTCATTCATCTGGCAAAATGCACTGgtcacacatttaaatttacTAAAAAGAACTGACTCATAGTACTGATTTTTACAGGAATAGAATGGATTACACTTGTCACGCTTTCAAAATTAGTGACTCAGGAATGGGATGAACTAAACTGgttgtgttgtgttatgttGGTTGCCATTTAGCAAGCGGTTGCTTAAAATAAGCTACAAGTAGACTTGACTATATTGTTATGTGACACCACCGTCTTTTTGACCCGTAATCAGGTTGCATCTTTAAGacatctaaatgtaaatgatttctgTTATATTTGGGTAACCTCTTTGCATTTGAAATAAGAACTCCACTACAAAGGTGCTGAATACTCAAAAGGTGTTATATAGGTGATCATATCAGTTAATGTGTTCATCAACactattatacattttgaattatCTGAATTTGCAgGTTTGAggttagtaaaaaaataataggaataataatattaattaactatataGTAAGGACATCTAATTAAAGTATGGATTAcagtttgggttagggttacttgcatgtaattatgcatagtttattgttattataatagtaagcacatgtaaaaatgcattttaaaataaatgttgtaaaataatgtttattttaatgcgacaaaaaaatgaaagaacgaAGCAGCACAGCCGATTTCaccactgattaaaaaaaaaaaagtttcctgaGCAGTAAATTAACaagttagaatgatttctgaaggaacacGGCATGTGATACAGAAAATTAAACTtggaattatttaattgtaaaatacattaataatttgaaattgtaataatacttcacaatattactgcttttacatCTGCATctaacaaatgcagccttggcaaGCGTAATAGACTTCTTTCAGCAATGTCCCCTTTAATACACAACGCTGTTCACAAGATGGAGAAATGGCAGAAAATCAAGTTGCGAATCCCTGTGCTTGCAGAAAACAtggtcctgtgtgtgtgtgtgggtgtgcgcgcacgtgcatgcatgtataattATGTTTCTGATTCTCACCATGTTGTTCTGTCTCTGCTGGTCCTCCATCAGTGTGACCTGACTGACGGAGGGCAAGCCCACCACCACAGACTGAGGCAgaaagagagggacagagaggaGGAGACCAGGAGGGTTTAGAACAGCATGCACATTCACATCTCAAGCCGAGGAGAAATACAAACGGGGCGAGTGCACAGggccagagacagagacagagcagGGCaagggagagaggagagggagagggagagggagaagCACTGCTGCTTTACCTGCTGTTGCACGTTGCCATGCGTAACGGGGATGGGGCCCGGCGGTCTGTTGTGGAAGTTCTGATTGGGTGGGACCTGCCCAGGTTGCATCTGAACAGCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248664.1 lncRNA upstream 58342 11012209 ~ 11018702 (+) True LOC122333718
TU28072 lncRNA upstream 106580 10932371 ~ 10970464 (+) True G18824
TU28101 lncRNA upstream 156173 10920360 ~ 10920871 (+) True G18847
TU28076 lncRNA upstream 248209 10827078 ~ 10828835 (+) True G18828
TU28064 lncRNA upstream 264258 10811824 ~ 10812786 (+) True G18817
TU28177 lncRNA downstream 30016 11108748 ~ 11110425 (+) True G18903
XR_006249203.1 lncRNA downstream 83146 11161878 ~ 11162645 (+) False LOC122336295
TU28197 lncRNA downstream 83184 11161916 ~ 11162907 (+) True LOC122336295
TU28198 lncRNA downstream 83184 11161916 ~ 11162907 (+) False LOC122336295
XR_006249197.1 lncRNA downstream 83189 11161921 ~ 11162645 (+) False LOC122336295
XM_043231371.1 mRNA upstream 70410 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 70410 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA upstream 70410 10978149 ~ 11006634 (+) False mybpc2a
XM_043233932.1 mRNA upstream 122315 10948678 ~ 10954729 (+) True akt1s1
XM_043235139.1 mRNA upstream 191421 10874237 ~ 10885623 (+) True LOC122341641
XM_043235291.1 mRNA downstream 200005 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 226593 11305325 ~ 11308557 (+) True prf1.9
XM_043235879.1 mRNA downstream 229950 11308682 ~ 11313369 (+) True prf1.1
XM_043228831.1 mRNA downstream 255009 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 255010 11333742 ~ 11335780 (+) False LOC122331261
TU28036 other upstream 295191 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 295191 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1042577 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1277289 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1327164 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 83622 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 255027 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 290161 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 694469 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 694469 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile