RNA id: TU28198


Basic Information

Item Value
RNA id TU28198
length 460
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122336295
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11161878 ~ 11162907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTAGGAGCTGCTTTCAGTAGGCTGaAGACCGAATATACCCGGACGCTTCACTGCTGCTTTGAGAGCGTTATCTGGTGACGTGAGTGTGGCCCGTGGATCAGCTTCCGCGATTCAACAAATACTATTAAATGAGCGTTTAAAACTAAGCTtgctgtttcatattttattttaataaactgttgGTTTCCCCACAAACTTTTAAAGGtcttgtgtattttattttttttgctacattaacattttagtgCTTAATGTCGTTTATTGGGGAAAAATTTACTctatacaaacatttttggaGGAGAAAAGGTGGGGTTAAAAAAGCCCGCCGTATTCCACTCGCATGATGGTACTTTTAGTagttgctttttgttttctctctggtAGGCATGTTCAAGCACTGAACCTTCTTGAGTTGAGTCCCTATTTTCAATTTTACTCTGTCCTTTTTCATAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28177 lncRNA upstream 51491 11108748 ~ 11110425 (+) True G18903
TU28146 lncRNA upstream 65498 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA upstream 83184 11077044 ~ 11078732 (+) True G18894
XR_006248664.1 lncRNA upstream 143214 11012209 ~ 11018702 (+) True LOC122333718
TU28072 lncRNA upstream 191452 10932371 ~ 10970464 (+) True G18824
XR_006249214.1 lncRNA downstream 26649 11189556 ~ 11192995 (+) True LOC122336311
TU28206 lncRNA downstream 27032 11189939 ~ 11192392 (+) False LOC122336311
TU28212 lncRNA downstream 107295 11270202 ~ 11271106 (+) True G18932
TU28231 lncRNA downstream 108261 11271168 ~ 11370981 (+) False G18945
TU28247 lncRNA downstream 126840 11289747 ~ 11294605 (+) True G18960
XM_043231371.1 mRNA upstream 155282 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 155282 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA upstream 155282 10978149 ~ 11006634 (+) False mybpc2a
XM_043233932.1 mRNA upstream 207187 10948678 ~ 10954729 (+) True akt1s1
XM_043235139.1 mRNA upstream 276293 10874237 ~ 10885623 (+) True LOC122341641
XM_043235291.1 mRNA downstream 115830 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 142418 11305325 ~ 11308557 (+) True prf1.9
XM_043235879.1 mRNA downstream 145775 11308682 ~ 11313369 (+) True prf1.1
XM_043228831.1 mRNA downstream 170834 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 170835 11333742 ~ 11335780 (+) False LOC122331261
TU28036 other upstream 380063 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 380063 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1127449 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1362161 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1412036 9739796 ~ 9749880 (+) True G18491
TU28257 other downstream 170852 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 205986 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 610294 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 610294 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 610294 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile