RNA id: TU28236


Basic Information

Item Value
RNA id TU28236
length 532
RNA type TUCP
GC content 0.33
exon number 3
gene id G18949
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11368893 ~ 11369752 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGAACTAACCGTTCAGTTCTGTTTCATAAGAGTTTTTCTGGGAGAGGCCTCGACGGTCAAGCGCTGGTCTTTCTGGCCCGAGATCCGTGTCAAGCCTCTCAGCATGATGGAAAGCTGGAGCTCAGTAACTTCCGTCCGTCACGAGGACAGACTCACTCCAGAGACGAACATGGCCCGAAGGACATCATACCACATTATATCCTGCGCAGAGCCAGGGCACAGAACAGGACGCAAAACCGTGAGGGGTTTGTGATGAAAGAGATCACCAGCCCTGCTGAGGCCGCGCTGTACCAGACAACCTATCAAACGGCGCATTGCGCCACTTCCAACAGATGTCAGACAAACGAAGCACGCGGACAGCCAGTCCTCCGGCACAGGCACGACATCATTACAGGAGAGGAGAAGGCAGCAGCTGGGCCCGGGGAGGTCAGAAGGCAGTCTGGGGAGAAGGTTCTGTGGGCAGCTCGGCGTTGGGAGATGCACAGCGACTCTTTTCGTTTGTATTGAACGTGTCGGcaataaacagctaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28229 lncRNA upstream 16118 11326598 ~ 11352775 (+) True G18945
TU28247 lncRNA upstream 74288 11289747 ~ 11294605 (+) True G18960
TU28248 lncRNA upstream 74288 11289747 ~ 11294605 (+) False G18960
TU28212 lncRNA upstream 97787 11270202 ~ 11271106 (+) True G18932
XR_006249214.1 lncRNA upstream 175898 11189556 ~ 11192995 (+) True LOC122336311
TU28274 lncRNA downstream 1750 11371502 ~ 11375401 (+) True G18982
TU28233 lncRNA downstream 10521 11380273 ~ 11380790 (+) True G18946
TU28487 lncRNA downstream 67192 11436944 ~ 11437197 (+) True G19123
TU28491 lncRNA downstream 70754 11440506 ~ 11441338 (+) True G19126
TU28582 lncRNA downstream 342857 11712609 ~ 11719579 (+) False G19184
XM_043228438.1 mRNA upstream 1778 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043228819.1 mRNA upstream 22959 11344269 ~ 11345934 (+) True si:dkey-66i24.7
XM_043228831.1 mRNA upstream 33113 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA upstream 33113 11333742 ~ 11335780 (+) False LOC122331261
XM_043235879.1 mRNA upstream 55524 11308682 ~ 11313369 (+) True prf1.1
XM_043235874.1 mRNA downstream 38285 11408037 ~ 11413269 (+) True clec19a
XM_043235460.1 mRNA downstream 127901 11497653 ~ 11515159 (+) True LOC122341817
XM_043235659.1 mRNA downstream 221848 11591600 ~ 11594168 (+) True ccdc43
XM_043235982.1 mRNA downstream 233922 11603674 ~ 11606177 (+) True fzd2
XM_043235667.1 mRNA downstream 246443 11616195 ~ 11629282 (+) False mylk5
TU28257 other upstream 33068 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 206450 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 587040 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 587040 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1334426 10025818 ~ 10034467 (+) True G18574
XR_006249731.1 other downstream 403449 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 403449 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 403449 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 722851 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 933612 12303364 ~ 12312990 (+) False nbr1b

Expression Profile