RNA id: TU28257


Basic Information

Item Value
RNA id TU28257
length 599
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC122331261
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11333741 ~ 11335825 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAGGAGTCTCATGGTTTAGGCCAGGACAGACCAAaggacaaacagacagaggtGTAGAAAGAGAAAGTAGCTAATAACTGAGAAACAAAGAACGAAAACACCTGATCAACCTCTTTGGAAGCAGAAGATGGCGATGTCTCCCACTGCTGTGGTGGCCCGCCGGGTTCTTGCCGCTGCATCACATGGAAGCCATGAAGGAGGAGCAAGGACCTGGAAGATCCTGTCCTTTGTATTAGCTCTGCCTGGTGTGGGTGTCTGCATGGCAAACACTTACATGAAGATGCTGGCCCATTCCCATGATCACCCAGAGTTTGTGCCGTACCCACACCTCCGCATTCGAACCAAGCCATGGCCATGGGGTGATGGGAATCACTCTCTCTTCCACAACTCTCATACGAACCCTCTGCCCACCGGTTACGAGGAATCTCACCACTGAGCAGGACGCCCCCTGCTGTCTCAACTGTTTGTCCCCTCAGATGCTGATCAATACTGATGGACAAGCTTCTAACACAAATTCTaacattaacagaaataaacagttttcacattaattgtgtgtgtgtgtgtgtgactgattAAGAAAGGTTGTGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28247 lncRNA upstream 39154 11289747 ~ 11294605 (+) True G18960
TU28248 lncRNA upstream 39154 11289747 ~ 11294605 (+) False G18960
TU28212 lncRNA upstream 62653 11270202 ~ 11271106 (+) True G18932
XR_006249214.1 lncRNA upstream 140764 11189556 ~ 11192995 (+) True LOC122336311
TU28206 lncRNA upstream 141367 11189939 ~ 11192392 (+) False LOC122336311
TU28274 lncRNA downstream 35677 11371502 ~ 11375401 (+) True G18982
TU28233 lncRNA downstream 44448 11380273 ~ 11380790 (+) True G18946
TU28487 lncRNA downstream 101119 11436944 ~ 11437197 (+) True G19123
TU28491 lncRNA downstream 104681 11440506 ~ 11441338 (+) True G19126
TU28582 lncRNA downstream 376784 11712609 ~ 11719579 (+) False G19184
XM_043235879.1 mRNA upstream 20390 11308682 ~ 11313369 (+) True prf1.1
XM_043235878.1 mRNA upstream 25202 11305325 ~ 11308557 (+) True prf1.9
XM_043235291.1 mRNA upstream 52018 11278737 ~ 11281741 (+) True cldni
XM_043231371.1 mRNA upstream 327125 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 327125 10978149 ~ 11006634 (+) False mybpc2a
XM_043228819.1 mRNA downstream 8444 11344269 ~ 11345934 (+) True si:dkey-66i24.7
XM_043228438.1 mRNA downstream 27158 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043235874.1 mRNA downstream 72212 11408037 ~ 11413269 (+) True clec19a
XM_043235460.1 mRNA downstream 161828 11497653 ~ 11515159 (+) True LOC122341817
XM_043235659.1 mRNA downstream 255775 11591600 ~ 11594168 (+) True ccdc43
XR_006250543.1 other upstream 171316 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 551906 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 551906 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1299292 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1534004 9798815 ~ 9799755 (+) True hbbe1.3
TU28236 other downstream 33068 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 437376 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 437376 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 437376 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 756778 12092603 ~ 12100852 (+) True LOC122342134

Expression Profile