RNA id: TU28478


Basic Information

Item Value
RNA id TU28478
length 2321
lncRNA type sense_over
GC content 0.54
exon number 1
gene id syt17
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11411985 ~ 11429179 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaatgaccaaatatttaaataataatatatagctTCTTAAGGCTTCTGTAGAGGTTTGTATccctttgtaaatgtattagtGTTAGTGTCTGCACATGTGAACATTTCTCTCACAGCCATGCCAAGAAGGTGCAGACACATGCATTTCTCTTTACGCTGTTGCCTTCACTCCACGCTTTTGCCAAGTTCCGTTCATGTACTGTATTATCATTATCTCGGAGCTGTATTTTGTCTCAAATCTCTGTCAGTCTATGATGTAAGCCTAAGTAGGATATGTTTGGGAGGAAAAATGTACTTAGCATAAAATCAAGTGCAATCAGAAACATTACTGTATCTGTCTTCTTAATCTTTCTTCTGTGGTTAGGTCAGTTGTATGTTTCCGCCAGTGTCAATGTTAGTGTAGATGATTCCAAATGATTAGAGCGCTGATATTAATacgtattaataataatgaagctgTGCCAGTGaagatatgtatttatttatttatttattcagatttgaaAAAAGCATATAATAATAGCTATATAATTATCTCTAAAAcatatctgtatatatttataacttaAATTGTGTACGAAGAATTGAACAAAGCATGTTGCaatataaatgaaacagaatttagatgaatcatgataaataaaaaaaaagttgaaattacTTCGCTGACAGAAAGATTTTGGTTTCAAGGGTGACTGTCTTCATTATattctaaacaaaaatgtttagtcCACTGTCTCCCTGTCTGCTTTGAAACGTTTGATGATGAGCAGAATCCCTTTAAAGGTCTCTTTTACAGAGATTGTAATGTGTGAATCAATCAGAGACATGCATTAAGTGAGGAAAGTGTATTTTGGTTgtttcataatgcattaaagTGGTGTTTATTACTGGACTTCTCCCTTTGTTttagtgtgatttttatttttatggtagtCATTTATATAGAATCTTCTTATACCTTAATACCTGCATGTTGGTACATATTGGGGCATCAgtaacatccaaaataatttttttcttttttattaaataagtgaGCTATCCCTCTATCAATCATTCGAAATACTTGTTTTAACCGTGTGGCAATTGCAGTGATGACCCTGGCACTAATtaaatcaccaaaaaaaaaaaagatttaggattgtttgtgtaaaaatgttccCTCTGCAGGCTTTAAGAGGGAGATAATTACTCTGAGGTTTACAAGAGGGTCAATTAATTACTCTCTTCGGCAACAGGGGAACATCTTAACCCCACTGTGCACGCGGGTCAGCCAGATAATCATCAAAACTAGCTTGTTTACCTCCTCTTGACATATTTCATCCAGAAATTTCCATCCAGAAAGGCAATTAAAGCagaggtttgaaatgaaaacttttaaatcgtataaaacttttatttgatgaatttaCTTTTATGGTCCATGAACTTAATTtcccattttttaaaagttgaactATTCATTTCATCGCcgcattttaaagcagtttaccATGCATGAgacaatgcaaaaaagaaacaagcgCAATAGTCAAAAGATATCTATTTAACACgtttgcataaaaacaatggAATCTTGTGAACAGCCTAATTCGTTTTCTAAATATTGAGGTATATTCCAAATAAACAAGCATAATTAGTGACAATTatcttattttgcattattattaaacttatCTATTTTGTGACAGTGTGTTTCAATTACTTTTGTAGTGTACCATATTAAATTCCTTCCTGTTCTTCCAATCCAACATACTTAAAATTACAGATTAGCTAATGTATGAAAAAAGAGTATGTATTGAAAGTAATGTATTGAAAAAGGGGGTTTGGGACCCTTGCTAGCAGTTGTGTGGATGAGAATAGAGGTTTTTGTAGGGGGTCACTAATAATTAGCACGACACATAGAGAGAAAAGGTCATCTGCCTAGATGAGGTTAAGCTCTTTCTGTCTTTAGAAGCTCTGCAGTCAACAGAGGCTTAAATGCCTTCTCTTTTAGAATCTCACCTCCTGGGTCAGTGACAAATAAATGTGCACAGATGGACACTGGCAGTGTTTGGGGTTCCAGATCAAGACTCAGGAGTCATTATATGAACACACGCATTCCTGTCTGCAAGAAATTACAAATGCACttcaaatatcaaaaacaaGAGACATTTTCGGACTTTTTATAAAATCCTGGAGGGCTCCGGCAAACATACCCTATCTGAAAAGAAGGAAATAATTGCCAGATGACTGGGTGGGGACCTGAGCTTTCATTCTAGTTCAGTTTAGCTATATGCTGCAGGTCACTATCTACACTAAAAAATAAGCTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28475 lncRNA downstream 1269 11410335 ~ 11410716 (-) True G19117
TU28458 lncRNA downstream 76185 11333756 ~ 11335800 (-) False G19108
TU28460 lncRNA downstream 76185 11334983 ~ 11335800 (-) True G19108
TU28461 lncRNA downstream 76185 11334983 ~ 11335800 (-) False G19108
TU28324 lncRNA downstream 642587 10767300 ~ 10769398 (-) True G19019
TU28853 lncRNA upstream 355417 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 429709 11844014 ~ 11844199 (-) True G19381
TU28861 lncRNA upstream 439443 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA upstream 439443 11853748 ~ 11880082 (-) False G19383
TU28871 lncRNA upstream 439443 11853748 ~ 11880959 (-) False G19383
XM_043230155.1 mRNA downstream 8886 11376189 ~ 11403099 (-) False smg1
XM_043230146.1 mRNA downstream 8886 11376189 ~ 11403099 (-) True smg1
XM_043235484.1 mRNA downstream 36616 11370068 ~ 11375369 (-) True arl6ip1
XM_043225584.1 mRNA downstream 50823 11355874 ~ 11361162 (-) False zgc:153292
XM_043235991.1 mRNA upstream 17478 11431783 ~ 11435061 (-) True LOC122342175
XM_043235461.1 mRNA upstream 23282 11437587 ~ 11441308 (-) False LOC122341818
XM_043235462.1 mRNA upstream 23282 11437587 ~ 11441258 (-) True LOC122341818
XM_043235463.1 mRNA upstream 31220 11445525 ~ 11447703 (-) True apnl
XM_043235464.1 mRNA upstream 31220 11445525 ~ 11447621 (-) False apnl
XR_006248663.1 other downstream 347402 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 631789 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 632750 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 1015644 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1949080 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 279967 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 298515 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 301417 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 301417 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 301417 11715722 ~ 11727975 (-) False limd2

Expression Profile