RNA id: TU28625


Basic Information

Item Value
RNA id TU28625
length 1731
lncRNA type sense_over
GC content 0.27
exon number 2
gene id syt5a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11885655 ~ 11893656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

accctggacaacaaaaacagtcataagtGGCACAGCTATATTTGCAGCATTGTATggtttgaatgattttttttctttttctgtccaaCCTTACCCAAGTTCTGCGTTTCACTCTGGCTGAAacaaatcattaggatattaaataaagatcatggtccattaagatattttataaatttcctaatgtaaataaatcagaaCTTTTTGATTATCAATATGGAGATAAAAAATAGTTATTATGTGTTGATAACAAACGATGAGcctatttattcattatagaaaatgtattaatacgGCAGCCAATATTAGGCATGTCTACCAAAAGCAATTGTCCGGCCGGATTCAGCAGTATTTAGAGGTGGAGTCCTGGATTAATCTTGTGCTGTTTTCGGCGGTGTTCCAAGTGCAGCGCTGGACTAAGCCATACATGTGAGCAGGGAATTAGAGCCACAGAAGGGCGGGGGTGCGGAGAGGAGGAAGGAGACCAGGAAGGACACAGACAAAGTCAGACATAGTAAAAGGGAGAGCGTGGGGAAGGTTGGACAGATAGGGAAGTAAGTAAACTGgttaaatataaattgattGCATACAGATTAACACAAGCCAAGATGTAAATCTTCCTTGAACTTCCTAGCTCGCCAGAATGACCACGACTGCATCCAACGTTTAAAATATTGGCATACACAATAAATTTTGATTTTAGATTAATATTCTCAccaaaaatattctgaaaggCTGTTGTTCACACAGAGAAAGATTTAAGCCTCTGCTTAGCCAGCAGGGGGCATAGTGTCGACATGAAGTTTTGCTAGAGAGCCTGAAGGCCACCAGATGACAGTTGCAGATCAACAATAGTTAGTATTGTCAGTAATACATGATTAACATAGGTTCCCGTTTTCTGTTATGCAACAACCATATAATGCACTGTGCATATAATTAtcttgcattaaatatataatacctGCATGTGATTAATTTCTTAAGAATACCACAAAAACTGTTGCACCGTCTATCCTTACCATAATAACTTACATTAgtatagcagcaaaagtgttctGCAATACAACATGAACATGATGTAGCGGTACCAATTTAATTacattctgaaaatatatattgctatTAAAATGCAGTCATATTTTGGGTTCCTTGATAACATTCCATTTTAGTTCAGTAAATCTTATGAAAACTGACCAGAAAACATGTAGGAAAGTACATTTAAGCAAATGACTTGTGATGTTAATGGCGAGGCATGTGAACTGGAGACCACAATTCCAGCATCATATAAACAGGATTCTCAGACAACGTTTGAATGAGGACAGACATCTTTAAATGACGTCAAAGCCACGTCTGTCTGCCAcacaacttatttttatttcctcaaCACACATTTCTCTTCCATTTAGGAGGGAATTAGTTTCTGATGCATTAGGAGTCTGCTTTGCAAAGAATAAATGATACTTCAGATGCaacttttcatttacatttattaatgtagcAGACACTTTTTTCCTTAAGTGCCTTacgaatgaaaataatatagaaGTGATTCATCTCATCCAAACACATCAGAGGAGTTTCGAATACATTCAGAAATATTATTCTTTTGCACAGGCTGTAAAATTGTCCGAAGAGTCAAAAGTAAAAGCATCCATGGTGTCTTTTCATTATTTCCCATTTTCTTATTTCCAGCGACCTCCAACCTTTCCTTTACCATGGCCTTTTTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249757.1 lncRNA upstream 56650 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 172324 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 173131 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 450565 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 454706 11436944 ~ 11437197 (+) True G19123
TU28622 lncRNA downstream 73992 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 149228 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 179063 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 180575 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 223687 12117343 ~ 12117909 (+) False pax10
XM_043233685.1 mRNA upstream 6904 11878905 ~ 11884999 (+) False LOC122336110
XM_043233684.1 mRNA upstream 6904 11883609 ~ 11884999 (+) True LOC122336110
XM_043233689.1 mRNA upstream 11016 11857788 ~ 11880887 (+) True LOC122336152
XM_043233688.1 mRNA upstream 11016 11878982 ~ 11880887 (+) False LOC122336152
XM_043233690.1 mRNA upstream 15345 11857771 ~ 11876558 (+) True LOC122336178
XM_043228260.1 mRNA downstream 83232 11976888 ~ 11979058 (+) True prl
XM_043225818.1 mRNA downstream 86107 11979763 ~ 11982000 (+) True LOC122329533
XM_043225827.1 mRNA downstream 86147 11979803 ~ 11982000 (+) False LOC122329533
XM_043230846.1 mRNA downstream 90890 11984546 ~ 11986105 (+) True LOC122333296
XM_043228732.1 mRNA downstream 101439 11995095 ~ 12013540 (+) True ap2a1
XR_006249731.1 other upstream 57979 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 57979 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 57979 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 522151 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 556078 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 198947 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 409708 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 618270 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 618270 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 626181 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile