RNA id: XM_043235435.1


Basic Information

Item Value
RNA id XM_043235435.1
length 3356
RNA type mRNA
GC content 0.41
exon number 10
gene id syt5a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11885655 ~ 11893656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGATTCACCGACTATAATCCGATTCAGCAGGGTCACTGAACAAATATTATATTGGAAATTAGAATCGGATAAACAGCATGCGGGAGATTATATGGGACACTAGCAAACCGATAAACGGGCGTACGAGATGGATGGAATAAGACTGTCACATGAGAAAACCCAGGGCGCGTAACTGGACAGAAGGGAGAGCACGATTAATCCAAGTGAAAGAGGGTTTGGCGCTTCAAATGCGCTTTGGGGAGAGAGAGGGACGGATGATAAAGTGGATGATAAGAGTAAGTTTGAGCAGTGTGTGAGAGGGCTGCTGCGTAACTGTCCTCTCTAAACAACGCGCAGGTTTCTGTCTGTTTAAGAGAGTAGGATTTGTTTATCATCACCAGCTGATCAGCAATGCGATTGGTCAGCATGCAGCATCGCGTGCGGAGAGCAGCAGAATCAGAGGAGGAGCCCAAACCTGCTCCACCTCCTCCGCCTCCACCCTCTCACCACTCCCACAACTTCATGAATATGAAGAATAAGTTTTTCAATGAGCTTAGCCATCTACCTAACCCCAAGATCAGAATGCCCATGTGGGCCATTGGTGCCATAGTTGTGGTCGTGCTTGCCCTGGTTGGCTGCTTTGCTTTCTGCATCTATAAGAAGTGCTtgggaggaaagaaaaaagctaaaaaagtCAGAGAGAGGAAGGGAGGACGAAGACGGATGAAAAAGGAAGGAGAGGAAGAAGCAGGCGAGGAACAACCTAAAGAAGGAGAGGGCGAAGGAGAGAAGGAATATTATGGCAAGTTGGAGTATACTCTGGACTATAACTTCACTGACAACCAGCTCATTGTTGGTATCTTGCAAGCCCAAGACCTTCCTGCCATGGATATTGGTGGAACATCTGACCCTTACGTCAAAGTTTACATGCTACCAGACAAGAAGAAAAAGTTTGAAACCAAGGTCCAGCGCAAGAATCTGTCTCCTGTTTTCAACGAGACATTCATATTTAAGATCCCCTTTAATGATCTAGCAGGGCAGACTCTGGTCCTGCAGGTGTTTGACTTTGACCGCTTTGGTAAACACGATGTCATCGGAGAGATCAAAATCCCTATGAACAGCATTGACCTGGGGCAGCCCATACATGAATGGAAAGACCTGGTcggaggagagaaagaggaaCAAGAAAAGTTAGGAGACATCTGTATCTCCCTGCGTTACGTGCCTACCTCCGGTAAACTGACCGTCTGTATCATGGAGGCCAAGAACCTGAAGAAGATGGATGTGGGTGGTTTATCAGATCCTTTTGTGAAAGTGGTTTTGCAACACAATGGAAAGCGtatcaagaagaagaagacgacaGTTAAGCAAAACACACTGAACCCTTACTTCAATGAAAGCTTCAGCTTTGAAATCCCCTTTGCTCAGATTCAGAAGATCCAGGTGTTGATCACGGTCTATGACTATGATAAACTGGGAAGCAATGATCCAATCGGGAAGTGCTGGATTGGGTTTGGCGCCAGTGGGGTGGGTCTGCGCCACTGGTCAGACATGCTGGCCAATCCCAGACGACCTGTGGCCCAGTGGCACACCCTTCAGCCTGAGGAGGAAGTAGATGCTGCCCTTAAAGCACCTATCCGCTAAATATCTTATCCAACCCTCAACTAAATATTTCCggcaaaacatcatttaaatttCATCCATCCTTTTACTAAGTTTCTGTCTGTTATGTTATTGATCATCATCCTGTACCCTTCCTTACTGTAAATCATAGGAGTGATCTCTTTTATACACGTTATAATGTTCAACTGGTttgtgtttcttatttaaatgtgtctGTATGATGTGGATGAATGATGTGTGTGCTTTGTTTGAAAGTGTTGCATGCACGTATCTGTCCATAACTGTATGAGAATTGTCTTGATTTGCCTCGTCTTTCTTTTCTGTCAACCAAGATGACTATAAACACAACAACTGGATACATCATCACAGattttaagatgtgttttttttatttctcataggctacaaatgtgaccctggacaacaaaaacagtcataagtGGCACAGCTATATTTGCAGCATTGTATggtttgaatgattttttttctttttctgtccaaCCTTACCCAAGTTCTGCGTTTCACTCTGGCTGAAacaaatcattaggatattaaataaagatcatggtccattaagatattttataaatttcctaatgtaaataaatcagaaCTTTTTGATTATCAATATGGAGATAAAAAATAGTTATTATGTGTTGATAACAAACGATGAGcctatttattcattatagaaaatgtattaatacgGCAGCCAATATTAGGCATGTCTACCAAAAGCAATTGTCCGGCCGGATTCAGCAGTATTTAGAGGTGGAGTCCTGGATTAATCTTGTGCTGTTTTCGGCGGTGTTCCAAGTGCAGCGCTGGACTAAGCCATACATGTGAGCAGGGAATTAGAGCCACAGAAGGGCGGGGGTGCGGAGAGGAGGAAGGAGACCAGGAAGGACACAGACAAAGTCAGACATAGTAAAAGGGAGAGCGTGGGGAAGGTTGGACAGATAGGGAAGTAAGTAAACTGgttaaatataaattgattGCATACAGATTAACACAAGCCAAGATGTAAATCTTCCTTGAACTTCCTAGCTCGCCAGAATGACCACGACTGCATCCAACGTTTAAAATATTGGCATACACAATAAATTTTGATTTTAGATTAATATTCTCAccaaaaatattctgaaaggCTGTTGTTCACACAGAGAAAGATTTAAGCCTCTGCTTAGCCAGCAGGGGGCATAGTGTCGACATGAAGTTTTGCTAGAGAGCCTGAAGGCCACCAGATGACAGTTGCAGATCAACAATAGTTAGTATTGTCAGTAATACATGATTAACATAGGTTCCCGTTTTCTGTTATGCAACAACCATATAATGCACTGTGCATATAATTAtcttgcattaaatatataatacctGCATGTGATTAATTTCTTAAGAATACCACAAAAACTGTTGCACCGTCTATCCTTACCATAATAACTTACATTAgtatagcagcaaaagtgttctGCAATACAACATGAACATGATGTACTTTACTAAAAACCTAATATAAAGCGGTACCAATTTAATTacattctgaaaatatatattgctatTAAAATGCAGTCATATTTTGGGTTCCTTGATAACATTCCATTTTAGTTCAGTAAATCTTATGAAAACTGACCAGAAAACATGTAGGAAAGTACATTTAAGCAAATGACTTGTGATGTTAATGGCGAGGCATGTGAACTGGAGACCACAATTCCAGCATCATATAAACAGGATTCTCAGACAACGTTTGAATGAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249757.1 lncRNA upstream 50402 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 166076 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 166883 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 444317 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 448458 11436944 ~ 11437197 (+) True G19123
TU28622 lncRNA downstream 74406 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 149642 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 179477 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 180989 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 224101 12117343 ~ 12117909 (+) False pax10
XM_043233685.1 mRNA upstream 656 11878905 ~ 11884999 (+) False LOC122336110
XM_043233684.1 mRNA upstream 656 11883609 ~ 11884999 (+) True LOC122336110
XM_043233688.1 mRNA upstream 4768 11878982 ~ 11880887 (+) False LOC122336152
XM_043233691.1 mRNA upstream 9097 11861707 ~ 11876558 (+) False LOC122336178
XM_043233687.1 mRNA upstream 18177 11866054 ~ 11867478 (+) True LOC122336136
XM_043228260.1 mRNA downstream 83646 11976888 ~ 11979058 (+) True prl
XM_043225818.1 mRNA downstream 86521 11979763 ~ 11982000 (+) True LOC122329533
XM_043225827.1 mRNA downstream 86561 11979803 ~ 11982000 (+) False LOC122329533
XM_043230846.1 mRNA downstream 91304 11984546 ~ 11986105 (+) True LOC122333296
XM_043228732.1 mRNA downstream 101853 11995095 ~ 12013540 (+) True ap2a1
XR_006249731.1 other upstream 51731 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 51731 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 51731 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 515903 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 549830 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 199361 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 410122 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 618684 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 618684 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 626595 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile