RNA id: TU28697


Basic Information

Item Value
RNA id TU28697
length 567
lncRNA type sense_over
GC content 0.42
exon number 1
gene id pax10
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12114048 ~ 12117939 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGATTCTTTCCCGGTGTTTCCGCAGCAGGGCAGACTGCAGTTCAAGGTGGCGATCAGGAGCTGGGACAAGGTCTGGGTCAGTACTGGACGAgactgcagtaaaaaaaaacacaccttgTCATTATCAGACAAAACCAGCAGAGCTTCAATCAgcaaattatttaacaaaacgtGTGTCAGGAAACCCTACTTATTTAGATTATGTATGCATCAGGGAAGCAGTCTATGTAAGCCATAATCTTGTGAAAAAAGTGGACCTCACAAACCTGCACAAAGGGAAGAGACAACGGACTCCAGCCTTTTTGATCTGCACAGTTATATAGGCTTACTCAGCAGCACCATGCCAGATAATGGCAAAGACTAGTCAGGTTAACATTCTCAGCTATTGGAGCATCTAAAACATTAACAGAGGCCAACACCTTGCCTCGTGTTGATGCAAcgaaaaatgctgtttaattgATGTGCCACTTACAATCCGTGTGATAAACTGCATATGACCAAAAATGTATCTgccgtttaaaagtttgggtttgCTAAAATATTTCGATGTTTCATATGCTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28687 lncRNA upstream 42840 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 44270 12072719 ~ 12073073 (+) True G19255
TU28679 lncRNA upstream 67921 12042884 ~ 12049422 (+) False prr12b
TU28622 lncRNA upstream 143337 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 223687 11891903 ~ 11893656 (+) False syt5a
TU28698 lncRNA downstream 629 12118538 ~ 12118775 (+) True G19263
TU28710 lncRNA downstream 14720 12132629 ~ 12134957 (+) True G19274
TU28736 lncRNA downstream 110026 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 128299 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 394017 12511926 ~ 12513721 (+) True G19326
XM_043235899.1 mRNA upstream 14411 12098906 ~ 12102932 (+) True LOC122342107
XM_043235932.1 mRNA upstream 19138 12092898 ~ 12098205 (+) False LOC122342134
XM_043230519.1 mRNA upstream 27138 12075141 ~ 12090205 (+) True trpm4a
XM_043230529.1 mRNA upstream 27138 12075194 ~ 12090205 (+) False trpm4a
XM_043230508.1 mRNA upstream 45193 12062091 ~ 12072150 (+) True scaf1
XM_043233744.1 mRNA downstream 2765 12120674 ~ 12127106 (+) True bcl2l12
XM_043233743.1 mRNA downstream 2765 12120674 ~ 12127106 (+) False bcl2l12
XM_043235777.1 mRNA downstream 23392 12141301 ~ 12143887 (+) True unc119.2
XM_043235657.1 mRNA downstream 27202 12145111 ~ 12149131 (+) True mmp25a
XM_043234868.1 mRNA downstream 31888 12149797 ~ 12158601 (+) True srrm2
TU28690 other upstream 16491 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 283419 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 283419 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 283419 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 747591 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 185455 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 394017 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 394017 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 401928 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 717472 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile