RNA id: TU28710


Basic Information

Item Value
RNA id TU28710
length 2308
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G19274
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12132629 ~ 12134957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgccATCATTAATATTCTATgccataatttttttatgctcacaGTAAACAAAAGTTTCTTTCTCAGAATGTAAGTCTTAAAATCTTTAGCTGTTGTTTTTTGACATCAACATTGTGCcataatcaattaatcaattaaatttaatttaattcactgTCAATAAGCTAATTTCTGTAGCAACTGTATCTTTAGATAAAGGATAAAGACTATACATTATAGCAAACACTGGAAATGGATGAATGATGATGTTTAATTAATACAGCCATTATCTCATCTTAAAAGTGAGGTCACATTGTTTGACAAATTTTCATTGGTGAAATCCATATTTTCAATAGCAATCCATACAGTCTGCAAATTTACATAAGGGGTTAAAGCTTTCCCCACAAACATTTTCCAATGGGTTCAATTGGTCATATGAATTGGCCATTTTGCTGTGTGGTTTCAAAATGAATTTCTTTATAAACTGTGATTCACACATCAGTACACTATTGacaataattactatttttgcCAGGAAAATTTGGCAGAACTTTTGCTAATATGACcccactttaaaatataaaacaactgtGGAAAATGAGTATCAATTTTAGAACATTATTCAAAACTGCACCATTGTTAATAATGAACTGCTATAGTCAAATAACATATACAAAACCTATTACTTAGTCCTTGTTTATAGGATAAATTACGTAATCAAGTCATTCCAATGAATTCCTTAATGTTCATTTAGTCAACAGAAGACTTTTAGACAGCTGTGGTGAGACAGAACGTTTCTCCTCCGTTCATGCCCTTCTCTTcacttttttcctttcctttctgtCCCTCACTCTCCTCCGGTGTTGTTTCAGGCTTGCCTTCATTCACATCCTCATCTATATAAAGCAGAGGCTCCTGCTCCTCCCATTTCTTAGCCTCCTTGGTACCGTCCCCACCCACTCCACCGTTAGACTCTTCTCCTGCATCCAGAGCAACGAATGTGCTGAGCACCATATCGTCTCCATCTGGTTTCCCATTATTAGGCAGAAAACCCTCCTGTACCTCACCGTCACATTCAAGCCCCGCCCACGCATCATCCTccatcccttttttctttttggaccGTTTACTTTGTCCATTCATATACATGGGGCTGAAATTCcttgctgtgtttttctttcgCCGCTGGGCGAACAAAATCGCACCTACACACAGCGAGAATATAATGGCCacaaatactattattattaatagccaGTTGTTTTTGAAAGGCATAGTACTTTCCCCAATAATCATGGTGGGTGTCGTGGTGAAAAGGGTGGAGACTGACTCTGATTCTGGGTAATTAGCAGTGTTTTCAGGGAACAGTGTAGTTGATGTTGATGTAGTGGAGCTCTCAGTGATGGTGTCCACAGGGTCCGACATCGAAATGATGGACGTAGACTCAGTCTCGTCTGCAGGTGGTGTGGTTAGGATGGATGTGGGATGGAGGGCTTCTGTTGATTCAGTGGTCATGGCATCAGCTGCTGTGATTTCATCTGTAGGACCTTCAGTGGGACTGGTTGGCTCAGGTGAAGTGAAGCTAACAGTCGTTTCATGCTGAATAGTGCTTGGGGCACCTAGAGTAATCACTGTTGTCTCCACATTAACAGGCAGCAGGTAGGTGCTCACTGTGATCGGCTCAGTTTGCCCAGGTGTTGTTTCAGGAACAGATTCTAGTGATGTTAGTTCAACCTCAGTGATCGATGGTGGAGTACTCCCCCCTGTTGTTTCCTCAGACatggtgtttattttattaatagctGTGGTTTCAGTATTATGCAGATCTGTCTGTAGAGTAGCTGTATTTTCAGATGTGGCACTTAGGATTTCAGAACTCAACGTTGGCtccacaatgtttttattttgtaacgtGATGGTGATGTTTtcgtctgtctctgtctctgtcgtTGTCTCTTGCGCATCAGTGGACTTGAAACAGGGTCCAAGAGCAAGATACAGAAGCAAGTTACCCAAAATGAGCTTCATGATGAAAATACTGGCTAAAAAAGTCTCTCAGTTTAGAAGCTTCTTATAGCGATTTAAATATTCAGGCAACCTGGGTGAGCTGATATTGTGGTTGGAGATCCACTTTTAAACCTCGCGAACGTGTTTAGAAGCTCTTGACTATACGTTAGATGGAAGCAGTTGTTAGAAGAAATTCATGTTTTGTGCTCGCTCTCTGCGAGGTTGATGTTTTATAGAGGTAATGTTGTGTTGGGCCGGAAAGTTTTACACAGACCAGTAgcttcctctttctcctctctcagTGTAATATGGACGATTTCA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28698 lncRNA upstream 13854 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 14720 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 58126 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 59556 12072719 ~ 12073073 (+) True G19255
TU28679 lncRNA upstream 83207 12042884 ~ 12049422 (+) False prr12b
TU28736 lncRNA downstream 92978 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 111251 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 376969 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 376969 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 546301 12681258 ~ 12681565 (+) True G19579
XM_043233744.1 mRNA upstream 5523 12120674 ~ 12127106 (+) True bcl2l12
XM_043233743.1 mRNA upstream 5523 12120674 ~ 12127106 (+) False bcl2l12
XM_043235680.1 mRNA upstream 14690 12114048 ~ 12117939 (+) True pax10
XM_043235899.1 mRNA upstream 29697 12098906 ~ 12102932 (+) True LOC122342107
XM_043235932.1 mRNA upstream 34424 12092898 ~ 12098205 (+) False LOC122342134
XM_043235777.1 mRNA downstream 6344 12141301 ~ 12143887 (+) True unc119.2
XM_043235657.1 mRNA downstream 10154 12145111 ~ 12149131 (+) True mmp25a
XM_043234868.1 mRNA downstream 14840 12149797 ~ 12158601 (+) True srrm2
XM_043235314.1 mRNA downstream 24225 12159182 ~ 12162641 (+) True thoc6
XM_043234070.1 mRNA downstream 28653 12163610 ~ 12168731 (+) False si:dkey-16l2.16
TU28690 other upstream 31777 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 298705 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 298705 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 298705 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 762877 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 168407 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 376969 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 376969 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 384880 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 700424 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile