RNA id: TU28829


Basic Information

Item Value
RNA id TU28829
length 3447
RNA type TUCP
GC content 0.40
exon number 4
gene id limd2
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11712820 ~ 11728001 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAAGGCACGTCAAGCTCTCCAGACGGCTCGAATGAACACAGCGTGTGCTGCTGGTACGTTTCGTTTAGCGCAACCGGAGAAGTTAATCGTTCAGACCGGCCGAGGAAACGAATGAGATATCAACCGAGTCGTGCACAGTGAGTGGACCGGACAGGGCAGCAGCAACCCCTTTTCTCTACCGCAGACTGATAAGGAGACCCAGATGGACAACAGGAACACATCTGATGACAAGCCCGTTCAGCGTTCTAAGTCTTTCAGTTTCAAGACGCAGAAGGAGACGTGTGCATCATGTGAGAAAACCGTGTATCCGATGGAGAGATTGGTGGCCAACAACCTCATCTTCCACACCACGTGCTTCTGCTGCAAGCATTGCAACACCAAACTCAGTCTGGGGTCCTATGCGGCGCTGCAGGGGGAGTTCTACTGCAAACCACACTTCCAGCAGCTCTTCAAGAGTAAAGGGAACTACGATGAGGGCTTCGGGCGCAAGCAGCACAAGGAGCTCTGGGCCTCCAAGGATGCAGAGAGCATCACCAAGACGCCATAATCCTCAGTGATCTTTCCAAAGCACCTCTCCCCTCCCTAGCCAACGATGATGACCCTTTATATACTCTGCCCATGTCAATACACACATgcatccacacaaacacactcacacactcatttcAAGCACACAAGCAGTTGATCCAGGCTTCTCATGATATCACAACACAATCACAAATATACCAAGATAATGTGATCGTTGATTAGCTTCTCTTTTgtctgttcatttttattttattttttttatttctcctgcCCTTCAttctctatttttaatttagcttttttttttttttttttttttttttttttttttgtgtaatgttGTGGAGTAAACAGTTAGTTGATTGTGACCAAAATCTTTGTGTCCCTATAGAGGTGGGATGATTCACTTCTTAGCGTTGTTACGGTCCTGTTTGGCAGTATCTGTTGGTTTTCTGTCATGAAAGGTTTCAAGATGGTTTAGATTATACACTCAGGTAAAGATTCTGGGTTGTTGCATCAAGATTATTCAGCAATCTTTTATGTACATAGTGaacttaaatgttttgttttatgatggaTATATGTCCCTCACTTCAGTTACAGCAGTCTGTACTGTTTTCAAactaaatggcttttttttttttttttttttttttttttttaattgtctgcTTTGCTGGCACAGGGTATTTTATCTGTGAATCTACAGGGTACACTGTACTGTAAAGAACTCTCTTGAGTTTACACCCACCACCCCTTATCTTTGCattctttttcatctttgttttAACTTCTTTTGACTTTAAGAATTAGTATTTGACATATCCTTTCAGATCCAACAATATCATTCTTAAGCACGAGTATCCTTGACCAAATGTAGCTGTAAACGCCAATATCTGCTAAGATAATATTTACCTACTCTAAAATGAATTTGATTTTACAAATTTAAGATTTAGATCAGCTATGATTTCTGGCGCCCTCTAGCGTCTTGGATGATATTTCTTATTTGACATAATGCTGGTTATTCTCTGCCATCTAGTGATATCTCCGCTCATTTTATCAATCATAAATATTCCTTatgtcttattttctttttctttttttttatacgttgTTGCTCAATGATTTCTTGTAAAGGCATTTGTACATAAGTACCACTAAACTGAGTGAATGTACTGTGATGCACTATACTGTACTTATGCCTTGCTGCATGGGACCAAGCTTGTACAACAAAATTAAGATATATCACAGGGAACTAGGTCTCAGAGGAAATGTCATTTATGATGCTTCGCACTATTACCTCCCCTCCCCCCTCTCACTCCACCACTTCCTGTCATTGCATAGTTTTGGGCTGTTTCCTGTAGGCTTCTCCGTGACGGGGTTTTGTGGGACTTTGAGCACATGCACAATCGTGTGGCTCGGAAGCATTGCTCAGGAATACGGACGATCCAGCACCGTCACCCCTAGTGTTCATTGTTAGGAGCTGTAGTTCATCACACAAACATTATGCCCTAAATTGACCAACAGTCAGCAGTCGGGGGTTTGAGCAGGAAGGGGGTCCCGTACATCTAAACAAAGACTTCCATCCCAGGTTTTATATGCACATGTCAGCGTGAAACTGTGACTTGTGAATTGTCACTGTGGCCATAAGCTGTGACCTCTCCAGAGGTTGATGTATTTGTGTACAAACATCATTAATGCcattatgttgtttttcatgaaTGAAATGCCTCTGTGTTTTAATACTGTtgcttcttttgttttgtctgttttttagTGTAACACGGTAAAGCTGTTCTGATAAGCCGGTATTTCGTAAATGTCATATATAAGTGGTCTGTAGATAGTTTTGCCTTTAGTTTTAGGCCCATGATAATGGCTTGTTTTGTTCGCTAATGTCTCGTCTGCCTTCCAGTGCAATGGCCTTTTGTCTGTACTTTTGAGGAGATTCTCCACGTAGACTTGCTAAGTCATTGAAAATCATCCAAATATTTTCAACAACTTGCACACCACAAAattccctgtgtgtgtgtgtggtatatGTTTAATGATGACTGTGAAATTGAAATGCATTGAGAGGTTTAGAGGAATTATCGAAAGCTCTTGGcacaaaatgaaagaatattttcatattaagccttattttagttgcatttctttttatcgCTTGAATCATTTTTAGAACACCTCCCccccccacccaccccaaaaaaagaaaagaaatctttcacaatcataatttcataatcagctttctcattttctctccgTTAATAAATCGGTCTTTATTTTCACTGCGTTTTCTCTTCTGtccaaatgtgcttttaattttggAACAAACCTTTCACAGACACAAATCACTGTGTTTACACCAATTGTTCGTTGTGTTTGCACGCAGTGCGCCAAGGTACAAATGACACAATATCCTGCAGACACTCGCTGTCTTTTATAAACTACAGAACAAATAGGAAAAAGGTACTTTGCTCTTTTCTGATGGATTTGTAGTTCTTgaaatgtgtgagtgtgtctatGTAAATGTATGGATATTTAAGGTTGCAAAAGATTATTTTTGAATGCTGTTGACTCTTGTCTGCATGCGTTGAGTGAGAGGAGATAAATGTACGCAAAGTGTATTACTCTATATCTAAAACTTGATCAGTGGAACAAGGTGGCCTTAAAGCAGAAGGAGGTCTTGGCTCTTTACTTGTCTCTTTTGTCCCCCCATCAGGTTTATTTTTGTCTAAGTACTTTTATCAGCCCTCCAGTTCAACTGCTACAAGaatttctaataaaatgtgtttttgctttctgtCACTTCCCACAGTGTTTCTCATATTTTTCTCCTCctgtttatttctcatttttgtacACCCTTTTGGAGAAAAACAATAAACGATATGCTGGTGATGATCAACc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28478 lncRNA downstream 301417 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA downstream 301417 11413407 ~ 11414305 (-) False syt17
TU28475 lncRNA downstream 305006 11410335 ~ 11410716 (-) True G19117
TU28460 lncRNA downstream 379922 11334983 ~ 11335800 (-) True G19108
TU28853 lncRNA upstream 41747 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 116039 11844014 ~ 11844199 (-) True G19381
TU28861 lncRNA upstream 125773 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA upstream 125773 11853748 ~ 11880082 (-) False G19383
TU28871 lncRNA upstream 125773 11853748 ~ 11880959 (-) False G19383
XM_043234643.1 mRNA downstream 1003 11694272 ~ 11714719 (-) True map3k3
XM_043228279.1 mRNA downstream 27603 11681350 ~ 11688119 (-) True LOC122330909
XM_043234573.1 mRNA downstream 39395 11645898 ~ 11676327 (-) True kcnh6a
XM_043235527.1 mRNA downstream 75665 11633421 ~ 11640057 (-) True ccdc47
XM_043234666.1 mRNA downstream 113341 11597240 ~ 11602381 (-) True moto
XM_043235421.1 mRNA upstream 4018 11731993 ~ 11739714 (-) True ddx42
XM_043235423.1 mRNA upstream 4018 11731993 ~ 11738368 (-) False ddx42
XM_043235538.1 mRNA upstream 22253 11750228 ~ 11753580 (-) True rnf113a
XM_043233834.1 mRNA upstream 106402 11834377 ~ 11836695 (-) True LOC122338209
XM_043234667.1 mRNA upstream 109668 11837643 ~ 11843610 (-) True baxb
XR_006250462.1 other downstream 1003 11694272 ~ 11714719 (-) False map3k3
XR_006248663.1 other downstream 651139 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 935526 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 936487 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 1319381 10394314 ~ 10396341 (-) True eef2kmt
TU28873 other upstream 125773 11853748 ~ 11862963 (-) True G19383
XR_006250490.1 other upstream 185027 11913002 ~ 11920767 (-) False LOC122341756
TU29176 other upstream 894808 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 1253112 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 1259375 12987350 ~ 12992329 (-) True LOC122331939

Expression Profile