RNA id: TU28910


Basic Information

Item Value
RNA id TU28910
length 443
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122330904
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11968594 ~ 11975569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctttttctcttgcaCATGCAACCACAGGAGCGCACGGATCACACCAACGCCACAGAACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAGACCCCTGTCCCAGCACCCTGTGTGGCCATCAAGACCGACCTAGACAAATGTGTAAAGGAGAGTGGCGAGGAAGCGTGCAAGGAGCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCGTCATGAGGAGCTCAACATGCAGGAAAAGGTTTTACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGAGGTTTGGGGTTTGGCAACGGAGACCATATTAGTGTCTCTTTCCTTCTCTACCCCCCCGTGAAACTTAAATGGATTCCTCCAACCTCCCCTTCTTCTTTGTGGCTGATTGTATTGATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28871 lncRNA downstream 87708 11853748 ~ 11880959 (-) False G19383
TU28861 lncRNA downstream 88585 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA downstream 88585 11853748 ~ 11880082 (-) False G19383
TU28868 lncRNA downstream 89560 11857723 ~ 11879107 (-) False G19383
TU28877 lncRNA downstream 96761 11867007 ~ 11871906 (-) True G19385
TU28939 lncRNA upstream 45900 12019583 ~ 12023427 (-) True G19422
TU28944 lncRNA upstream 52681 12026364 ~ 12026940 (-) True G19427
TU28954 lncRNA upstream 70966 12044649 ~ 12045400 (-) True G19436
TU28978 lncRNA upstream 111646 12085329 ~ 12086221 (-) True G19453
TU28992 lncRNA upstream 119216 12092899 ~ 12097362 (-) True G19463
XM_043235759.1 mRNA downstream 2719 11949110 ~ 11965948 (-) True brsk1b
XM_043235310.1 mRNA downstream 20112 11924369 ~ 11948555 (-) True cpt1a2b
XM_043235349.1 mRNA downstream 47901 11909775 ~ 11920766 (-) False LOC122341756
XM_043235719.1 mRNA upstream 15419 11989102 ~ 11993163 (-) True prmt1
XM_043235417.1 mRNA upstream 75774 12049457 ~ 12059549 (-) True si:ch211-195b15.7
XM_043235898.1 mRNA upstream 129259 12102942 ~ 12106684 (-) True rcn3
XM_043233745.1 mRNA upstream 153327 12127010 ~ 12131799 (-) True tspan4b
XM_043233742.1 mRNA upstream 158913 12132596 ~ 12136213 (-) True si:ch73-248e21.7
XR_006250490.1 other downstream 47900 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 105704 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 240692 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 649100 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 1007404 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 1013667 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 1032313 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 1073358 13047041 ~ 13047494 (-) True G19700

Expression Profile