RNA id: unassigned_transcript_277


Basic Information

Item Value
RNA id unassigned_transcript_277
length 779
RNA type C_gene_segment
GC content 0.56
exon number 2
gene id LOC122332158
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12835381 ~ 12987913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGAGTGCTGAAGTGCAAAGCTTCAGCAGAGTTTTTGGGATCCTTCAATATAACAATAACAGCGAATCATAAGGACATTGCCAAGAAACCATTAGAGGGACAAATGTGGAACTTGACGCTCCAATAGGCTATGAAGAATGGAGAAACGGCACTAAATTTACATGCAAGGTTGAACACGATGACCTCATGGAGCCCACGTTGAAAACGTTCAACAGAGAAAAtgTCCCAGGAACAGCCAAGAAACCCACAGTTTACATATTAGCGCCCCCAGAGCACAGACCAGACGAACCGGTGACCCTGACATGTTACGTGAAAGACTTCTACCCCAAAGAGGTGTTTGTGTCTTGGCTTGCTGACGATGAACCTGTGACTTCTAAATACACCACTAGCCTGCCAATTCAGAACGATCAAACCTTTTCAGTCTACAGTCAGCTAACAGTTAATGCTTCCAAATGGAAGAATGGCACAGTGTTCAGCTGTGTCGTGTATCACGAAAAGCATCGATGACAATATGCGCGTACTGACCAGATCTATTACTGACGATACTGATAAGGCAGGTGTAATTAATCTAAGTATGAATACTGCATCTTGCAAGGCCTAGAGCATTGTGTATGTGGTGTCCTCCTGTTATGCCTGTTAAGTGCTCATTTTGTTTTCTCCTTTTGTCTTTTGGGTTGCATGTCCATTTTTGTAATCGTGTTGGTCTTTAATGTTTGTGGCTTCTTGCTTCTTTGAGATACTTTCTTGCACGTTGCATTTAGGAAGAgactaataaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA upstream 200786 12682818 ~ 12686371 (+) True G19575
TU29145 lncRNA upstream 205592 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 373436 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 373436 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 637160 12246208 ~ 12249997 (+) False LOC122341822
TU29234 lncRNA downstream 109156 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 117749 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 172099 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 173056 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 184072 13072133 ~ 13076694 (+) True G19624
XM_043235716.1 mRNA upstream 114975 12770572 ~ 12772182 (+) True alkbh7
XM_043228192.1 mRNA upstream 207400 12678396 ~ 12679757 (+) True ier2a
XM_043225918.1 mRNA upstream 210494 12662286 ~ 12676663 (+) False LOC122329583
XM_043229474.1 mRNA downstream 7265 12895326 ~ 12900216 (+) True LOC122332168
XM_043229415.1 mRNA downstream 84416 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 215215 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 224416 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 227970 13116031 ~ 13129608 (+) False carm1
XR_006250478.1 other upstream 358354 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 373436 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 373436 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 574167 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 786305 12092603 ~ 12100852 (+) True LOC122342134
TU29613 other downstream 810513 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1025562 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1161429 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 1230406 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1367429 14255490 ~ 14267791 (+) False abcc1