RNA id: TU29482


Basic Information

Item Value
RNA id TU29482
length 3285
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G19788
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13409739 ~ 13443578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTAGCACAGCAATGGAATATTCAACAACGCAAAAATGAATGAttgagagcttttttttttttattgcagtaacACAATTTTGCATCTGGCCGTACATCTCCAATAGTCATAACAGATCATAGAGCTCTGGACATTGAACACTGGTCACAGAAACCATATAAATGAATGGGcaggcaaacaaataaataaatacataaaacaactcatgaatattcattttaaaaaacaatatctaCCCACATTACACTTACACAGATACATACAGCCACACAAATAAGTTCACTCGAAAGCCTTTTGttgactcactcactcactcaaacacacacacacacacacacactcatgtagTGACCACAACAGATTATCAATCCACTGTATTAGCGATTATTGTTGTTCTCAAAGTGCTGGCTCCTCCAACACGGGtttacatatactatatattaccAGCTCCGACACTGTAAACCGAATCTacataaaactgaaacaaatcaaaCCGTCATATTTTGAACCTATGTACAATATCAAATAACACTGTGATCTAtatgttgttttcttgtgttaCCACAACACAGTCACAAAGGGAGGGTTCAGCGTATGCACACTACGAACAGCACAGCTCATCTTCACTACGGTATATACACACGACTACAGCTTTCTTATATCCTACTTAGAGATTTACGCGTTGCATGTTATAGATTCGCTATATATGTTCTGCACCCAGcagcatatatacatattttttaaatctgatttttttttttttacatcttcaTGGCTTCGAGTAGATCGAAACGGATATTCGTGTAAACAAACAGCGtacagaaatattacacaaaGCACAAGACGATATTGGATATTGGTTTGATATGAGGGGGTCGGCTGTGTGATCTCCGATCTCCGGTATTGTGAGGGTGTTGTTTGGGTGGAGTTTGCTCGCGGTTGCATGCAGTTGGGAGGAACAGCGCGGATCGTCCCTCTCTCCTGTCTTCCGTTACTCGTAGAAACCACGATCTCTGCGGAGAGAAGGACGGAGCATGAGAAGTTTACTCTGTGGGAGCACTGTGTACTGTATGTCGGTTGGTTTTGGGTTTCACCTCGGCCCCTTGGTGTTTGGGTACAGTCCAAATTTACAGACAAGCTCTGGCACACAGACTCTGTGACTTTGATGGCTTCCATCTGAAAGTCAATCATTACCAATATTGGCTGTTTTTCTGAGAGATGAAGTTCGGAAAGGCCCTTACTCTCTTTCTtgcacatttctgcttttactgtacattactgATGCACACTGTTTTCAGTTCTTCCCTTTAAAATCAGCATGAAATGAGCAGCTTTTTGacaaatgcatgctaataatggatatttccttttttgctttactttatttaatggAAATGTCACAATTCGATCTGGTTGCAAGTGTAACAGTGCACTGTGATGACTCCAACTGTTAAACTGTAGTAATTTTCGGTCATTTCTGTTTACCGTTAAACATAATTTGAGCATCCTGTAAAAACTATCCTTGttgtgaaaatgtacaaaatggaTCCTTATttctaattctttttttcttgtatattttGTGTCACCTGAAAGTATGTCCGATTCTAGAAGTAAAATAGATTGAAAACAGCTAAACTGAAGCACTAGTAAATAGAATGAGATGATTCACAATGGGAAAGTCTGACCTCTGCAGGCCTTGGGCAGGAAGATCAATTTTATAGCTTATTGACTGAATATATGTGTTgtataacatatttaataagcaCAACATTAAAGTACCTTTTATGTGATAATATTCAAAGTTTTGGGATAATATGTTTtttcgttttaatttttttacgtCTCGCCAAAGctgtattaaaatacagtaaaaacaataatattctgaaatattatttatttcattcttgtGATCCCAAAAATTATTcttattcattttgaaaacagttgtgctgcttaatagttttgttgaaaactgtgttttgttttagttttttaagaatttctctgtaaataaaaaagaacagtactttttttaaataaaaatattttgtaacattataaatgtctttacttttgcttttgatCAATagaatgcagccttgctgaatttttttttttctgacccaAAACTTGTCAAAGCAGCTATTAAAGCACATGAAGAGGTCGGGTTGCTACAGGACACTAGTTTTCAagttctttatatttaataaggGAAAAACTAAGGATCAAGACAATCCAAAGCAACTACTTGATGGCTCTAAATACAGCACCCTTACCATCGGTTTTCACCAGCAGAGTTAAATTCGGATGTGATTGTTTTCATCCAGCCTGTCAATtaacaaaatcaaatataaaacaagcgTAATGCCTGTCTAACTCTACTTCGGGTTTCTGATCCAGTGGGTCTGCGGCAGTAAGACATTGTTGTGCCAAATATGCAACATTTGATGGACATAGCGGTGTACTCACGCTCCCTCCTCTTTGAGTAGAGAGAGGAACTTGCTGACTCTGTATGCCTGATCCATCTAGAGAGGAGAGTAAACACAACATGCTATAAATAAACTTTGATTTTCGGGTATATGGTTCTCTGCATGTGACTCTGTCGCGAGATAAAATGAGCTCATGAAATTGCTAGACAGCACTTTAGATGTAGTATCAGATTCTTCTGTGCAAGAAACAGCTATAAAAAGCACAGAATACAAACTCAATTATTTAGACCACATTTCAAGAAGCATGTTAGAAAACCGCTTGAGCTCATTAAAGTTCTAGTCCACATGAATaagatattaaaacataaataaatccTGGAATTTAATGGTTTTGAGAGACTCTTAATTCTTCAGAATAGTACATTTACGGACTGAGGCTGACCTGCAGAGACATCTCAATGAGCATGAGAAGCTTTTTAATGCCGATCCACACTCTTTTTCCCTTTACGTGCTGGGCGATGGTGGTTCTCTCAGCATCTGTGAAGCTGCCCAGGAGCttgaaatgaacagaaaaaaaaagAGCTTCAACCAGATGTTCGCCACTGGAGATATTCTGCACATGGATGGTGGTGCTGAACGCATCCAGCATCTCCATCTCCTGCAGCACGTCTTTACGGCTGGTGGTGCCGATGATCAGCAGCTTACGGCCCTTATGTTCAAGAGAAGAACACCAGATATTTTACGCCCATAATCTAACAGGATAAATCCATGatgcaataaatgcaataaaaaaggttaaaacaCTGTTACGTACTGCATGAACATATATGACCTATGAGTAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250477.1 lncRNA upstream 23976 13408320 ~ 13411918 (+) True LOC122341620
TU29473 lncRNA upstream 72164 13362886 ~ 13363730 (+) True G19780
TU29470 lncRNA upstream 75559 13359319 ~ 13360335 (+) True G19777
TU29468 lncRNA upstream 76849 13358501 ~ 13359045 (+) True G19776
TU29469 lncRNA upstream 76849 13358647 ~ 13359045 (+) False G19776
TU29498 lncRNA downstream 2360 13441686 ~ 13442149 (+) True G19798
TU29615 lncRNA downstream 259248 13698574 ~ 13705402 (+) False rbbp6
TU29624 lncRNA downstream 348507 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 376027 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 474600 13913926 ~ 13920269 (+) True LOC122342149
XM_043235109.1 mRNA upstream 40931 13391973 ~ 13394963 (+) True dusp3b
XM_043235110.1 mRNA upstream 40931 13391973 ~ 13394963 (+) False dusp3b
XM_043230480.1 mRNA upstream 44388 13386428 ~ 13391506 (+) True dlx4a
XM_043235228.1 mRNA upstream 265640 13163996 ~ 13170254 (+) False znf207a
XM_043235288.1 mRNA downstream 22726 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235269.1 mRNA downstream 34182 13473508 ~ 13501419 (+) True itga3a
XM_043235267.1 mRNA downstream 34182 13473508 ~ 13501419 (+) False itga3a
XM_043229520.1 mRNA downstream 62278 13501604 ~ 13520389 (+) True ca10b
XM_043235209.1 mRNA downstream 81889 13521215 ~ 13528518 (+) True smarce1
TU29192 other upstream 447981 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 547833 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 907091 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 922173 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 922173 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 259248 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 474297 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 610164 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 679141 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 816164 14255490 ~ 14267791 (+) False abcc1

Expression Profile