RNA id: TU29485


Basic Information

Item Value
RNA id TU29485
length 1765
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G19788
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13409739 ~ 13443578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttatttgttttttttttttttttttgagagcttttttttttttattgcagtaacACAATTTTGCATCTGGCCGTACATCTCCAATAGTCATAACAGATCATAGAGCTCTGGACATTGAACACTGGTCACAGAAACCATATAAATGAATGGGcaggcaaacaaataaataaatacataaaacaactcatgaatattcattttaaaaaacaatatctaCCCACATTACACTTACACAGATACATACAGCCACACAAATAAGTTCACTCGAAAGCCTTTTGttgactcactcactcactcaaacacacacacacacacacacactcatgtagTGACCACAACAGATTATCAATCCACTGTATTAGCGATTATTGTTGTTCTCAAAGTGCTGGCTCCTCCAACACGGGtttacatatactatatattaccAGCTCCGACACTGTAAACCGAATCTacataaaactgaaacaaatcaaaCCGTCATATTTTGAACCTATGTACAATATCAAATAACACTGTGATCTAtatgttgttttcttgtgttaCCACAACACAGTCACAAAGGGAGGGTTCAGCGTATGCACACTACGAACAGCACAGCTCATCTTCACTACGGTATATACACACGACTACAGCTTTCTTATATCCTACTTAGAGATTTACGCGTTGCATGTTATAGATTCGCTATATATGTTCTGCACCCAGcagcatatatacatattttttaaatctgatttttttttttttacatcttcaTGGCTTCGAGTAGATCGAAACGGATATTCGTGTAAACAAACAGCGtacagaaatattacacaaaGCACAAGACGATATTGGATATTGGTTTGATATGAGGGGGTCGGCTGTGTGATCTCCGATCTCCGGTATTGTGAGGGTGTTGTTTGGGTGGAGTTTGCTCGCGGTTGCATGCAGTTGGGAGGAACAGCGCGGATCGTCCCTCTCTCCTGTCTTCCGTTACTCGTAGAAACCACGATCTGCTCCACTCCGTCGATCTTGGACAGGAGCTGGTTGACCACAGTGTCGTGCACACCTGTGCTGCTGGCACCTGTCCCACGCTGCTTACAGATAGCATCCAGCTCATCAAAGATGATGATATGCAGGCCACTGTTAGCACCCAACTGCAGAGCAAAATACAGAAGATAGCATAGTATACTACAGTACAATAATGTATGGTATTATGAGGACAGCGAGGTCTGTCTTCTCACCCTTTTCTGTTCCTCCTCAGCATCTGCGAACAGTTTCCTGATGTTGGCCTCAGATTCACCCACATACTTGTTGAGGATCTCGGGTCCGTTGACTATCTTTGGCTCTCTGGCGTTCAGCATCTTACCTATCTGCCTGGCCATCAGTGTTTTACCACAGCCAGGAGGACCAAAGAGCAGGATGCCTTTCACATGCTTACAGCCTGCAGAGAGAAAAACTCACTTTTACAACTCTCAAAAAAACACGCACATTACCCACAATCAATGCATTCGAGCATTTATAATGAGTACAAACATCAACATAAATGGACCGTTCTGGTGGATAAATGATTTTTACCAGATCACATGACAAAATGGAAAGCGAAGACGATACAAACCCATCTGCTCCACAATGTCTGGTGGAAAAACTCGAGAGGCGAAGGCCCTGCGGAAGATATCAGAGAACTCCTTGTCTAAACCACCGATGCCCATTTTCTCGAAGTTCCAGTCGGGGTTAATGATTGTCTGGCGGGCTTCTTTGGTCTTGGCCTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29473 lncRNA upstream 46009 13362886 ~ 13363730 (+) True G19780
TU29470 lncRNA upstream 49404 13359319 ~ 13360335 (+) True G19777
TU29468 lncRNA upstream 50694 13358501 ~ 13359045 (+) True G19776
TU29469 lncRNA upstream 50694 13358647 ~ 13359045 (+) False G19776
TU29467 lncRNA upstream 51331 13357713 ~ 13358408 (+) True G19775
TU29615 lncRNA downstream 254996 13698574 ~ 13705402 (+) False rbbp6
TU29624 lncRNA downstream 344255 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 371775 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 470348 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 497038 13940616 ~ 13943491 (+) True G19963
XM_043235109.1 mRNA upstream 14776 13391973 ~ 13394963 (+) True dusp3b
XM_043235110.1 mRNA upstream 14776 13391973 ~ 13394963 (+) False dusp3b
XM_043230480.1 mRNA upstream 18233 13386428 ~ 13391506 (+) True dlx4a
XM_043235228.1 mRNA upstream 239485 13163996 ~ 13170254 (+) False znf207a
XM_043235288.1 mRNA downstream 18474 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235269.1 mRNA downstream 29930 13473508 ~ 13501419 (+) True itga3a
XM_043235267.1 mRNA downstream 29930 13473508 ~ 13501419 (+) False itga3a
XM_043229520.1 mRNA downstream 58026 13501604 ~ 13520389 (+) True ca10b
XM_043235209.1 mRNA downstream 77637 13521215 ~ 13528518 (+) True smarce1
TU29192 other upstream 421826 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 521678 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 880936 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 896018 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 896018 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 254996 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 470045 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 605912 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 674889 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 811912 14255490 ~ 14267791 (+) False abcc1

Expression Profile