RNA id: TU29624


Basic Information

Item Value
RNA id TU29624
length 4291
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G19890
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13787833 ~ 13792555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTGGTGCGTCTAAGATGAGAGTGATATTCTTGGACTCATGCTAGACTCCATCCAAACCCAGATGCGATTAAGTCATCATGACCCAACATTATGGCTCCACAACTGCTTATTCAGCTAAACTGCACAGTAACACTAAAGGAACCACTAAGCCGGCCTAAACTGGGCTGTTCACTACTGGCCGGTAAAAGGTAATTTGTAACAGAGAAATTACCATTGTGAATATTTCAGGAAGAGAGCCCTGGGACACTGGGAAATGAGATGTCACTGTAATGTGACAGTGTGGGGTGTGACTAAGAGGCCATGCTTGCTCTCAAATTGGAGAGTAAAGCACCAGAGATCTGAGAGCATTAGCTTTGTCCTGAACAATCACCAAGAGGACCTGGCCTCTGGGCAGCCTAATTTGTGACATGAGGTGAACCTGAAAATTCAGAAATAACTGCAGTGAGTTCGTAATTTCAATCAGGAAACAGTTCCACTGACAAAACCGATTACTCTCCACAACTGTGGTAAGTGGATACGTTAGgccatctttttttattattatttgattattattattttaattatttacttacattATAAATAGTCCATTACAACAAAAAAGTGGGACAGATAACAcaatactaatatattttttgtttatcatatatacacactatcATTCAAATTTGATAGTGAGgcattttacattacaaaaaacatcaataaatgtTGCTCTTTTTCTAATCCAATACATTTTCCACAAATAccaagaaaaattaataataattagaaatattttttacgcAGCAATTCTGTTGCTGAATATTCAGaataaaatatgtcaaaacagcacaatttaattctaaattcataatttttttaaatatttaacaaataaatgcaactttggtGAGAATAAAGACTACTTTATAGATATTACTTACCCCAAAAACCTTTGAACTGTAGTTTACACTgaaatattactgaaaaaatcaaacaattacCTATTGTCTTAACGTGCATTAGTATGCAAAGAGAGAGGTCACAGACtaatatgaaaaatgaacatAGAACTAATATATTGTCAAAACAAccactaaatgtataatttagaagtcattataacaaaacattaacttGTCAATGCCATTTTAACCAATGACAATCAGGTATTTGTGTGATAAGAATACTTAGTTTGATGGGTGATGTCCTAATGACTTGCTGTTGGGTTTTTCTGTACTTGATTGTGTGAcgaaaaagcaacaaaaatagAAGGAGGGTAGAAGATGTCATTATCTTTTCTGTTGTGATATGGGGCGACAGCGTAAAATATATGGGTTGGAACAGAGACTATCACAGTGTGAAGAACAAAAGAGCGCGCACTCACTCTGTCACTGTCTTTGAGGATTTCTCCCGTTTGAAGGCCAGCTGGTACTTGAGGCTTTCTACCTCCTTCTTCATCTGGGGCAAGTCCATCTCATCCATGACTGCGGCTTGATGTGGAAGTGATCAAACTAAACCTAAACAAGAAAGAAGATTGTTTTCGCACATTGTGTCCTAAAACAGATGCTCATACTGCTTTAGTGGATATTTTACATGactcagtgattttttttttataacagccACCCTAAGGAGTTTTTAGactcaaaatgtaaatgtaacatatacaaatgtattttgatttagatttctcttGTACAGCTGATTTTGCATCAGTCGATTAGGATTGAAATGAATAATCTTGCTAAATAAGCACCTGTTCGTATGTACTAAGGATTTATGAATGTGATTTGTATGCCCATGCTGAACTGTTTGCATATGTTCCATGATgggaaaataaacaaaccacTTTTTGCAATGTTTATTCAGTTGCTTTGACTACAACAATAATTTATGTCGGTCTTTTCCAGCAAATACTGGcatgtttgattcatttttatttagcatttgattgcttaatttaattaaaaacaataaattgactgtacttgtattattatttcacaacaGTGAAAATGTGTGCTTATTAACCACCAATTGAAGgctgttttcatttaatgtagTCTAGGGTTGTAAGGCTAATTcatgctgtattttatttttatcgtTAAGTTAAACTCATGTCACCACATGAAACAAAGTTTAGATTACCTGACAAAACATTTCAACGTTGAAAACACTGTACCCGCACATATACCGTCTATTTTGTTCTGAGATGCACCGCGTGCTGTATTTggctttcaaataaatgaagatttCAGTAATTAGATGCTTGTCTAATGCTTCCTCCTCTCTGAGCAGGAGCTAAGGAGATCAGAGTTTGAGTCTGGAGTGTTTGAGTGTTGAGAGGAGTCCAGCATTGGGGCATGTGTGAGCCAGAGAGCAGAGACAGTTCAGCATGCAGGTGTTCTGCTGCCTCTCTACATCCGTCCCATAAAGGCTTTTAAGCGCTTCCCAGCAACACCAGCCAGACACTGGAGCCTCACACTCTAAAAGCTCTGATTTCACTATCTGAGACTAAACACACTCAGAGCAGCTGGGAGATTGTGCCGCTTCTCAAATCAAACGTGATGCTCAGAAATGGTTTGGAGGACAAAGATGTTTTGCAAACTGTCTTGCAAACTCACTTCTTTCAAACCGCTCATTCGTAAGGAGATATTCaagaaatgccttttaaatgtgacattgtGCACCAATACAGTGGAAGCAGAAGTTATTGCCAGAAGGTAAATACAACGATTTCAGTGCTTCACTGAGGCcctacacaaaaatataatcaataGTGTCCCAGAATATACAGCACTTTGCCGAAAGCCataaaccTCTTTATTTTCCATTCACCCATAAACCAAATATTACAGATGCATCAAATCttagatgaatgaatgatacTATTCATCAGGTTTATGCTTTTGGCTTGTTCATTAAATTATGTGCACTGCTCTGTAAAGTATAGGACagtgtgacattttaaatgaaggaCCAGGATGAACTTCCCAAGCCAAGTTCTTCATGTAGGTCGGTCAATGATGTAGGTCATCACCACATTGCTTTCAAATAGCAGGATCAAATTTCACTTTGATTTAACGAAATGATTCAAAACGAAACGAACGATTGCTAAACCGAAGCGCATATGATTCGCTGTATGCTGTCCTACTGGTGTGAAAAGAActagagaagaaaagaaatcgAACCTGCCAATAAATCCGATAACACAATTTCTGTAGCTACATGATCATCAGATGAAGACCAGCATGACTTGCTGTATCTCAGTTACCTCCAATGGGTATATTTAGGTTTCTCAGAGCAGATAAAACTATTAGGAAGCTACTGCGGGCTGAGGCTGAATTGCAGGCTTCTTAATTTCCTCCTTCCTGCAAAAAATaggctacatttaaataaccgaatgaatttattaatcaaaaaagaGGCACGGATAAAAGCGGGACGCAGAAAATCTAAGTTTTATGTAACACCGGCAAAATCGCTGGCAGCCACGGCGGTGATGGAGGGAGTGgaaaaaacaatatgaaaacGCAAAAAATAAGAATGCATGGATATCAATAACGAACATTTCACGCTAACATCCTAAGTTATGTCAACTGTCATAAAGAGTCTATCGCGGGGGAAAAATTGAGATCGATATGAATTCATATTTGTGTCGCTTACCTCGGTGATGTGCCTTTGGGTAAAACCCGAAGCCCGTCTTTGGTGCAGACTGTTCTTATCTATGGGAAATGTCCTCAGattaatcaaaaacacacatacgcCTGTGTCTGACTGACGAAAAACGACGGACGACTGTGTATCCGATGCAGACGGGCAAAAGGACTGGACGAGGAGACTGAAGATGGGCTCCGGAAGCGGCGGCGGACACGGCTGAAGCGATGCTGAAGAAGTTGAGCTGATGGCAGTGGTTACAGCCTAGTAAAGTGCAAGGACGCTGTTCAGCCGCTGCTGGGCCAATGTAGAGGAGGTGCTGGGGCAAATCTGTCTGGGAGGGGGGAATCAGAGGGCGGTTATATGCTGTTGAAGTCTAAATGCCTCTGCTAATGTTGGAGACAAAAGGACGCCCGACATCCCGTTGCCTATTCGCTAGAATTGTCAATGTCGGTGTTTAGATTTTCCATACGTATTTGCTTCTACTTTTCTGGCACGTTGATCCACTATCTATGCCCTAATATGGAAAAAATTGAGCTCCGGTGTGAGATTAagcggtttttttttttgtttaagaaaaCATTACGTTTTTTAGCTGTGCGATTCACGTTCTGGCgttttattaaatcacaaaGCTGTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29615 lncRNA upstream 82431 13698574 ~ 13705402 (+) False rbbp6
TU29485 lncRNA upstream 344255 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 345684 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 348507 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 375915 13408320 ~ 13411918 (+) True LOC122341620
TU29625 lncRNA downstream 22798 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 121371 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 148061 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 203915 13996470 ~ 13997081 (+) False slc16a3a
TU29788 lncRNA downstream 307618 14100173 ~ 14101904 (+) True G20009
XM_043233953.1 mRNA upstream 17888 13767191 ~ 13769945 (+) True rpusd1
XM_043233954.1 mRNA upstream 17888 13767191 ~ 13769945 (+) False rpusd1
XM_043233948.1 mRNA upstream 23461 13718936 ~ 13764372 (+) False LOC122339456
XM_043233946.1 mRNA upstream 23461 13737897 ~ 13764372 (+) False LOC122339456
XM_043233947.1 mRNA upstream 23461 13737897 ~ 13764372 (+) True LOC122339456
XM_043235797.1 mRNA downstream 4298 13796853 ~ 13808182 (+) True traf7
XM_043235798.1 mRNA downstream 4298 13796853 ~ 13808182 (+) False traf7
XM_043233930.1 mRNA downstream 96385 13888940 ~ 13902589 (+) True crlf3
XM_043235136.1 mRNA downstream 189699 13982254 ~ 13986772 (+) True scpep1
XM_043228898.1 mRNA downstream 203406 13995961 ~ 14002378 (+) False slc16a3a
TU29613 other upstream 85480 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 799920 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 899772 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1259030 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 1274112 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 121068 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 256935 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 325912 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 462935 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 742624 14535179 ~ 14615408 (+) True G20148

Expression Profile