RNA id: TU29625


Basic Information

Item Value
RNA id TU29625
length 2784
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G19891
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13815353 ~ 13818222 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttagaacatgcaacattttttcTGGAAATTGTACTTGTTTTCTGTAGAAACTTAATTTTGAAAACAAGTTTGTATATgcgaaatcattttaatattatggaTCCCAGTCCACTCAGTACACTATCTATCTTACCAAGTTTTGTAATGCCAATCTCCTGAAGGTCCTCCCACGTGATGTCAGTGATGAAGTCAATGTTCTCATATCCGTTTTGGACTAAGATTTGGTGATACTGACTCAACCCAATCATAGCTAACCATTCTCCAAGACTCGCGGTTTTTGGTCAGGCAGCCACTCATTTACAGTTATCTTATTGATCTCTGAGGTTATCTTCTTTCGATGTCCTGGTTTGGTAACTCCAATAGCTGTTAaatcctgaaaataaatataggaGACCCCTAAACATGCCAATTACATTTCAGCACCCTAAGACCTTCATACACACTAAATCAAGTTGCATATGTTCACTGCATATGAACATCtgcacaaaaatgtacaatattatacacaaaattacatatacacataaaaaataaaacccttaAAATCAGACATATCAAAGACTCTTGATTGCCAAAAGGTGCCAGGATGATAGAAGCAGatggcaaaataaaatgaaaaacggaatgggaaaaaaactaaaaaaaacaataccagGAACAAGTGAGGAAAAGAAGCCTTTTCAGAGTACCCttaaacataattatataaacataatccTAACTGATCATGTGTTAAAACAGAGCCGCCCTGTTCTGCTTTCAGCAATGACACTATGTAAATCCTATAAAGTGGTTTAGTTTAATTAATTGTGTATAGATGAGCTTGCTTTTATGAATTCAAATTGTTGAAAGATTAATTTCAGCTTtagtaatgatttttatttagttacagATATATACTCCATAGCATTAATGACATTACCATTAATAAAtctattacaaaatatatgtttgatatatactgtatgtttaaaattttaatcatAATACACAACAATAGTAAACAAAACATAGTAAGAAAAGACAGACACATTTGACAACCATGACAACGGCACTGTCTGGGGGGGTTTTCTGGTGAGTTTTTTCAACTTCTCCAAAATCCGAACTCATAAAACCTGCATGCTTCAGGGACATTGTTAGCAACTGTGTGTGAAAATTGGAGGATAATTTGTTGGTTGATCGCTTCTTTTCTGTGGTTTGAGTGGGTCTGAGAGTGTTACATTTCGGGTAGAGGGGAGTGACGTGAATTGTTCAGGGTGGCAAAAGGGGGTGGGGGGACAACTCTTACCTCTGGGGTCATTCGGCTAATGGTAGGAATATCATAGCCAGCGCTGATGAAGTTTGGAGCGTAGACCTGCAGCTGAAATTCACTCAGCCATTCGATAACAGCCTCTGAGCTCTAGAAGAGAAGATAGGTGGCAGTCTATCATTGTTTGGGTCCTGTGGCTGAAAATGGACCAGACCCCAGGCcaacaaacagaaaacatcaGTCCCAGTGACCAATGTCTCAACTCCACTAAACTTTTTtagtttatgaataattaaaacctGCTCCTACTTCTGTTCTGGTATTATACTGGAGTTACAATTATTGCTCTTGGTCCAGGTATCTGCTCTGGCAAAAATAGCCAAAGCTTTAGCAAACAGGGGCTTCTTTATGAACCAAATGGTTCAGTTAAAAAAAGGAGTGTCCATATATTATCTGCTTTGGAATGCCATTTCCCTGCAAGTAGGAGGATGTACTGTAACTTTGTGTAGGAGAGGCAAAAAACGGACGTGGGCAGCAAAGAAAATAGGGCTGTTTTGAACAGATGGCTCTCAGTCCAGAAGTCCAGCATGGAGCAGCTCTACTCAGCAGCTCCAAAGTCCCGCTGGGAAAGATATGGCAGCCAAATTTCTCTGTTATATGACTCTAAACAGTGTCTGATTTCAACTGATTTCAGCTAATTATAAAAATGGACAgtgtaaaatatgcattataaaagctCATTCATGGGATAAATGACAATAACACCTAGACAGTGTCATATTCATATTGCGCTGATACACCTTTCTCGAATATCAGCGTCATAGTCTAATATCCTCTACACTCAAGTCTGTGAACAGACTTGTGAACAGACTTGATCTTGATTATGTGCCATTACCATATCACCTTTAAAATACACTCctcattcaaatgaaaatctACGTTGTTGGGTACTCTCTGAAAAGAAATCATAAGGTGAAAATTACTGCAAATAAGGCAAAAATTTGGAATGGACTTCAAAATGTagcaaagaaaatgaaatgaatgaccGGAAAAGATCAGAGAGAATGTAATCGCTGTCAATATTAGACAGAAGTATCAGACAGAGAGGTTGACATGCGGAGAAGCCAACTTACCGTGTCCTGACGACAACCGAGAGCACGTAATACAGATGATGCCAGCTGTGAGAGGAAGTGCTGGGAAAGCATCCTGAATACGCAGAGGCCAGTGCATGCATGCGTATGTGTGCGTGAGAAAGTGTTTGCTTGTTTGAGGGAAAGGTAAGGGGACAGTGTGATTCGAGCGGGAGTAGGAGTCTCCTTACCTTCCCCTCGGGCAGCACCTCCCCTTTCCTCTGAGACACCGCCTCCCCATACGGCTGCTCATGAAGTGGACAGCTTGACAAACTCTGACTGCGTGAGGAGGGTCCTAGAAGAAGCATGAAATCATTCGTACACATTGAAGTACCGCTATTGCACAAACCAATCCCTTTTGTGATTTCTGACCAACTATCCCTCTTAGCCAATCAGATCCTTGT

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29624 lncRNA upstream 22798 13787833 ~ 13792555 (+) True G19890
TU29615 lncRNA upstream 109951 13698574 ~ 13705402 (+) False rbbp6
TU29485 lncRNA upstream 371775 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 373204 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 376027 13435894 ~ 13439326 (+) True G19788
XR_006250533.1 lncRNA downstream 95704 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 122394 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 178248 13996470 ~ 13997081 (+) False slc16a3a
TU29788 lncRNA downstream 281951 14100173 ~ 14101904 (+) True G20009
TU29726 lncRNA downstream 301963 14120185 ~ 14122057 (+) False smim22
XM_043235797.1 mRNA upstream 7171 13796853 ~ 13808182 (+) True traf7
XM_043235798.1 mRNA upstream 7171 13796853 ~ 13808182 (+) False traf7
XM_043233953.1 mRNA upstream 45408 13767191 ~ 13769945 (+) True rpusd1
XM_043233954.1 mRNA upstream 45408 13767191 ~ 13769945 (+) False rpusd1
XM_043233951.1 mRNA upstream 50981 13737898 ~ 13764372 (+) False LOC122339456
XM_043233930.1 mRNA downstream 70718 13888940 ~ 13902589 (+) True crlf3
XM_043235136.1 mRNA downstream 164032 13982254 ~ 13986772 (+) True scpep1
XM_043228898.1 mRNA downstream 177739 13995961 ~ 14002378 (+) False slc16a3a
XM_043228897.1 mRNA downstream 178664 13996886 ~ 14002378 (+) True slc16a3a
XM_043235003.1 mRNA downstream 211283 14029505 ~ 14036025 (+) False dus1l
TU29613 other upstream 113000 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 827440 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 927292 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1286550 12519837 ~ 12528803 (+) False gtpbp1
TU28787 other upstream 1301632 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 95401 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 231268 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 300245 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 437268 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 716957 14535179 ~ 14615408 (+) True G20148

Expression Profile