RNA id: XM_043233927.1


Basic Information

Item Value
RNA id XM_043233927.1
length 1109
RNA type mRNA
GC content 0.39
exon number 4
gene id smim22
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14120185 ~ 14123128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGCACATAAAGAACACTTTATGACTAGATTCCTGTAGTTTTGTGCAATCGTCGCACTTCCGCAAATCTCTCAGCGGTTGAACGAGACCTGATCAAAAGCGCCACAGAAACAGGTGTACGCGGTAACCCGGAAACACCACCAACGAAAACAACAGGAGTCGTCTCGCTGAAGTCATGGACAAGAGCATTCAGCAGGATTTTGAGAACCAGTTCAACGATGTGGTTTCGAGGCTACAGTCGAAGCAGATGTTTCAGTCGGACTGGGACATTGCCTCGTTTGCCGTTTTCTTTATCTTCATAGGCATGGTGCTGTTGCTGGTCATCTTGGTTCTGatccgctgctgctgctgctgctgctgcgatGAGAAGCCAAGAAGACAGAAGGTGGGAGCCGATAATATGGCAATGGAGCCATGATCTTCCTGAAACACAGGCACCATTACAACTGGGTTTCTTTCTCCAACAGTTATGCCACCTTTTCATTATTTACGTGTGAACAAGTAATCGAGGGAGAACTATATTTTAGCTAGACGCTTCCTTATAGGGatgataaaagacatttttcctactgtgtaaaaatgctgttaatatTTAGCCAGGAAATCACATGATTTGAATGTCATTGTCAGttgtatttatagatttttacatAGAAGCACGCTCACCAGTTTTGAAGACATTGGTTGCTTGAACCCTTTAAGCACTTTATAACAATCATCCTGGATGGGACTAGCGCAGGACTTTTACAAACAGCCtctattaaaattcattttagttgTTATTTGAACAGTAAGTATAACCTGTTAATCTGTAGCCTGGCTGTTAAAACTGTTGCACTTAACCTATAATCTTTACTTCAACCAGCGGCCTTGTCCaagttttaagtgtttttaatgaatttttaatctGAAATGTGCATATGATACAGAACttacaagagagagagagagagagagaaaaaaaagaagttttaaTGCTAATAAGAGAAATACTTGTGAAAACTATACCTTggaaaaatgtcaatatttgttttatttttagaaatgtaccacatttgtataaatattagaCTTTgtaagcaaataaaatacatacctttaaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29788 lncRNA upstream 18475 14100173 ~ 14101904 (+) True G20009
TU29750 lncRNA upstream 123298 13996470 ~ 13997081 (+) False slc16a3a
TU29717 lncRNA upstream 176888 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 200110 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 302157 13815353 ~ 13818222 (+) True G19891
TU29877 lncRNA downstream 26410 14148464 ~ 14150958 (+) True G20057
TU29948 lncRNA downstream 181096 14303150 ~ 14304893 (+) True G20113
TU29989 lncRNA downstream 257570 14379624 ~ 14457906 (+) True G20146
TU29987 lncRNA downstream 311651 14433705 ~ 14457906 (+) False G20146
TU30016 lncRNA downstream 495208 14617262 ~ 14618834 (+) True G20166
XM_043233924.1 mRNA upstream 9058 14102015 ~ 14111321 (+) True rgs9a
XM_043235112.1 mRNA upstream 35873 14076202 ~ 14084506 (+) True slc16a6b
XM_043234941.1 mRNA upstream 46975 14063275 ~ 14073404 (+) False wipi1
XM_043234922.1 mRNA downstream 35670 14157724 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234920.1 mRNA downstream 35672 14157726 ~ 14195322 (+) True si:dkeyp-72e1.9
XM_043234918.1 mRNA downstream 44355 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234921.1 mRNA downstream 44355 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234912.1 mRNA downstream 87673 14209727 ~ 14221810 (+) True pdxdc1
TU29797 other upstream 809 14118467 ~ 14119570 (+) True G20015
TU29734 other upstream 67347 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 206685 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 418026 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 1132466 12835381 ~ 12987913 (+) True LOC122332158
XR_006248644.1 other downstream 133436 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 413125 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 496940 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 542865 14664919 ~ 14671568 (+) True G20172
XR_006250545.1 other downstream 543432 14665486 ~ 14665570 (+) True LOC122342199

Expression Profile