RNA id: TU29734


Basic Information

Item Value
RNA id TU29734
length 3455
RNA type TUCP
GC content 0.37
exon number 2
gene id G19973
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14049490 ~ 14053032 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaatcattttattgcttGACCTGCCATTGGGACAATCTATACCAAAAGGTTTACAACTTGAGCACATCCAATGAAATCAAACCGTACACAGTTATAGAAAAAGAATAATAGAAAAATGGTCCTCTGACATTTTACAACTCTCTGTGCTGAGGGCTTAACAAACTGAAGAATAGGTGAACAGGAGTCTCTAAGCCTTGATGGCAAAGCCTACGAGCAAATATATCAATTCCTCTGTACATACTAGAACACAATTTTACTGAAAACTTCAGAAGAAAACACCATTGGCAGTCACAACCAGGGAATGAAAAGCAAActtggaggggaaaaaaaaaaaaaaaaaaaaaaaggttaatggTGGTAATACAAACACACTTCTAGTGTATCAATGAATGTTCCTCAAGAAACCGGGGCTGAAGTTAATAATAGATCATAATAAAGCAAGCAGAAAATTGTATTAGCGGTAGAACAAAtcacttcatttattcataaaaaggagagaattacaataaattttaaattatgcattttaccGAAAACAGGGAaagatttattgtttatttactcAGTTCTGCACTGCCAAATGAAGTTAAATTAACAAAGCAATACATATTGTGTTTGAGCAATAACAAGTACACCATTTAGCAATTGTATGCCTAACAAATGGTGTTACAGTTTACATTAAGGACTATAGAAATAATttcaaagtgtttatttattcaacccCATCATAAGGCATAAACCACTCAGTGAAAAGACAGTGGAACGGTTAATCAAAGGCTACTCCTTACATATCATTAAGGGTGCAGATTGTGTCTTTAAAGCTACAGCACCAAGATTTTACTGATTCTGAAATTATAATCCGGTCTAAAGGGGCAGAATCTGTGAATGAGTATCTTTTCCCAGACAACTGCAGTGGCAATGCAGTAAGGCTCTTAAATCAAGTGTCAGAGAGTAAAAAGAAAACCACTCCTTGCGGTCAGTAGGGCAGATAGTGAAGATAAAAACACGAAACCTAGGTCAGTTCACTTGAACCTTTCGTTAATTAACGTAGCAATTTTGGGGCAGttaaataaactcttaattacTGGAGTTTCAAGTCTAAACAAAATTACACTGCTAAGGGCCAAAGGTATCtgcatatgaaaaaataaactaaaattgtAGCTTATAGATAATACAGGTAACAAGCTGACAGAATATGTACGAATAGAATTGGAAGGGGGAAAACCTACCAGGAAATGTCTGTTGGCTGTGAATTATGAAAGTAAAGAAATCAGGCacttttcaaaaactaaatttgcTCGAGTCTGCAGTATAAAGGAGCTGGATATCTGAATAATTACATGAACACAAGatgtgtgaaaaacaaaaacacacagatttaaaattcacatcaactgttttcaaataataCAAGAATATATCTGTGTGACCATTAAAAATCTACTTTCAGCAACAGTTAACACTATTGTACCATCCAGTAAAATCCAACAACAGCTCAGAGAACCCTAAGAACAATGTCTGATAAGAGATTAAGTTGGTGGCAGTATTGGATTGCAGATCTACGCCAATCATTTGATGGACCCTAACCCTAATGGCATATAGACACCATGAACTCAACACAAGCGGTAAATACTGTCCCTGTTTTAAGACTTCGATTTAACTAAGGAGAATAAtctaaatctcaatttaaaaaaataaaaatacagacactgatcatttgaaaactatttttcttAGTCCTGCTCTGTTGATAAACCaaataatttcagtttaaattatgaaaagaaagaaagaagggaaaagacatttggtatttttaaagcaattcacATACACTCatcgaggaaaaaaaaaataacctaatGGGATTCTCTTGGCTAAAGAGGTCACCAAGTGGTCACTTCCTGTCGAGGAGGATCCTTGCATACTCGGTCAGATTTCATTAACCATTACATATCTGTAACTCTTCTCATCAAttaatcaaaactaaaaatgagtgctttttttgtacttaaacACAATGTTGAATACAAGATATCGTCACCTTTTTGTGGGGgaaacaaaccaataaaaacatttgcggCAGGTGGCATTTCAGAAGGGAGCAAATgcgaaacaaaattaaattttaaaaggaGATTTGTCTAATCCTGGTGTGCTCTACATAAGAATCCAGTGCAAGCCTATGTGTAGCATGAAGggagaacaaaacagaaaatggaaaaatcCAATGAAACAGGACTAAATGCCACAATGAAAGACAGCAGGCgcatataaagtgttttttatatatatatatctcaaactgtgcaaaaaaatatgGTTATGGTCATTTACTtctaatatataatcatttacaTACACTATATATGTGCAGCTATAACAATAAAAGAGCAAAGCTAATCACCACGATAACCATGGTGACATTTTAACTTCAGTACCCCCAAGAAAACAACATAACACATGGATTTATGCCTTTGGCTTCCCTATACTCAAATGCTTGAAATGAACGAGGGAAAACAGAACTGGAACTTGATGCCTCAAATAAGATACATCATACTGAATATACTGAATAGATACACTACATGAATGTCAACCCTGCCACTGATTTCCTTCCATTCAAAACACTGTTATACAGGAACGAGAAGCAACTTGGAGGAAAGAGACAATCCCGACAGACCTTGTTAGTTCAACATCTGTTCACATGACAGGCATCTGTGGCACAATGATTGGCTCGTTTCTCAGGCAAAACTAACAATCAGCCTTAAATGTACGATGGATACGAACGCGACAGGGTACGGCacgaaaaaagaagaaaaaaaaaagagagaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacactgAAGTGAATGGGCACCTGGGTGTTGGAAAATGCATAAAgaaaagtaagaaaataaaGCGGATTTGCATTGGTGGACCCTGCAATAGAGGAGGAAAGAGCCTAGTGCGCCTCAGACCGACAGAGACACAAAGCTGTTGTACTGCTGTATGTTTCGCTTCAGGATGTCTGAGCAGGGGCCGAGCACGCGTTCGAACCGTGGACGGTCAAGTTTTACGCACTTCAGCGGGCCGCGGGCAACCACGGTGGCGGCACGAGGCCGGTTCATAAGCAGAGCGATCTCACCTGTTGAAACACACATGCAgggaaatcaaaaaaaaaaaaaaaaaaaaaggacacagaggaacaaacacattaaagtgCACTAATGGACACTGCACATGGAATCCATAAGCAATTACATTTCTGGGATATGTTTAAATATACGCGGCATGAGAGATTTTCCAGAAAGTAAAGAAAGCACAATTACCAAAGTAGTCGGAAGGTGCAAGTCTCCCGACTTCTACAAACTCCTCATTCTCCGACCGCCGCTGCAGGACTGCTGCCGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29750 lncRNA upstream 52409 13996470 ~ 13997081 (+) False slc16a3a
TU29717 lncRNA upstream 105999 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 129221 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 231268 13815353 ~ 13818222 (+) True G19891
TU29624 lncRNA upstream 256935 13787833 ~ 13792555 (+) True G19890
TU29788 lncRNA downstream 47141 14100173 ~ 14101904 (+) True G20009
TU29726 lncRNA downstream 67153 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA downstream 67404 14120436 ~ 14122057 (+) False smim22
TU29727 lncRNA downstream 67404 14120436 ~ 14123128 (+) True smim22
TU29877 lncRNA downstream 95432 14148464 ~ 14150958 (+) True G20057
XM_043235003.1 mRNA upstream 13465 14029505 ~ 14036025 (+) False dus1l
XM_043235002.1 mRNA upstream 13465 14029545 ~ 14036025 (+) True dus1l
XM_043228898.1 mRNA upstream 47112 13995961 ~ 14002378 (+) False slc16a3a
XM_043228897.1 mRNA upstream 47112 13996886 ~ 14002378 (+) True slc16a3a
XM_043235136.1 mRNA upstream 62718 13982254 ~ 13986772 (+) True scpep1
XM_043234945.1 mRNA downstream 4612 14057644 ~ 14062454 (+) False zgc:86896
XM_043234944.1 mRNA downstream 4620 14057652 ~ 14062454 (+) True zgc:86896
XM_043234938.1 mRNA downstream 10241 14063273 ~ 14073404 (+) False wipi1
XM_043234935.1 mRNA downstream 10241 14063273 ~ 14073404 (+) False wipi1
XM_043234939.1 mRNA downstream 10241 14063273 ~ 14073404 (+) False wipi1
unassigned_transcript_286 other upstream 135796 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 347137 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 1061577 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 1161429 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1520687 12519837 ~ 12528803 (+) False gtpbp1
TU29797 other downstream 65435 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 202458 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 482147 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 565962 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 611887 14664919 ~ 14671568 (+) True G20172

Expression Profile