RNA id: TU29992


Basic Information

Item Value
RNA id TU29992
length 5051
RNA type TUCP
GC content 0.47
exon number 2
gene id G20148
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14535179 ~ 14615408 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctaattttaaataaagaaaacattttcgaaaaacaaaacaaaacaaaaaaatctgaaaaataatttaaaatcaaatagaaaataaaattattgcaGAATACTACAATCATACAGTTGTTACAAGATGCAAAAACAGCAtctcaaaatgtacatttttcagtgCAAGATTTCACAATTTCAATAACAAGGAATGGGAACCTTCAAATCCCAAAGTGTAACCTGTTATGTAGTTTCAACAGCCTGTGACATTATAAAAGTTTTGAAATCAACATGTACAATGTCTGTTCCATTCACTATTTTTGgaaaatttatattgatttacaACCAACCCGCAAAAATAGCTTAACACAGTTGAGTGCTGAGTATGGCTTTTATTTGAATCATCTTGTTCATGTTGTTTTGTGACACCCTTTTGATTAGAGTATGGTACAACTGTTTCTGATAATTGATATGAGCTGAAAAggataaaatattacaacatttcAGCAAACCAATCATCAGTTTAACACACCCTGCTTTTGTATAGCAGGCTGAAgtgtatatttgcatattcatacaATGAGTTAATAAATTCTGCAACTTTCATGAATGCTTAGTACACAGAAAACAAGTCTCCAAAAATGACCCTCAATATCACCCAATATCAACTGTACCAAAGCACGCTAAAAGCCTACAACAAAGATCTTGATTATGGCTTCAGCCAATGAGCTTtagacaaataaacaaagatttATGACATACCATAGAAAACTAAATATGCCAGTGGTTTCCTAGTTATTATAAGATTCACATCTTGGATTATGAACCAATTCTTGCAACTCATACTCcttgtgtgaatatatatatatacacatgatgTTAAATACATCAACCTGCCAGCCTAGCTTCTGGTTCTGTCCATTACAATCTCAAATGCCAGCCAAGATCGTATTCTGTCCTCAATTCAAATGTACTCCTAAATAACCCTGTTGAGGTCCGTCTAATGTAGCAGAGCACGTAGAGGACAGTGTGTCGCCAGATCGTGTCAACCGGTAGCTAAATCTTTTTTAGCTATTCACTGCTGGGCCAGGCTGGGCCAGGCCCTCTCTTTGAGAGAAAACGGATTTTCAGGAGCCATGGTTTGGAGGGTGCTGAAGGTCCTGTCCTGAGAAGATAGGGTGAAGTAGTGGGTGTAGCTGAAGCGCAGCTGCTGCCGCAGCAGTAGCTGGCCGGGGGGCAAAGAGAGTTGGGTAGAGGGCAGCGTGTGGGACGTGGTGTAGAGCGAGAGGGGTGTGATGGAGCGCTGAAGCTGGTATAATATGTATAGGTTGGCCTGAAAGGAAGGCAGTGTGGTGGGCTGGAATCAAGCCGGTGTGTCCTAAAGAGTGACCCAGTGAGTGACCCAAAGAATGGCCCAATGGTGACAAGGAGATAGGGGTTAGATGATGTTGAGGTATGTGGTGCACCTGGGCCAGCTGGGCATGGGCAGGGTGAGGATGATGTGGGGTATGGGGATGGATGCCCATAGCAGCAGCATGGTGCTGCAGGATTGCGTGCTGGACTGTGGTAATCGAGGTAGCAGAAGCTGCAGAAACTGAGGGTTGTTGAATGTGGATAGGCTGCAGTGCAGCTGGTGGGGGTGGAGGCGCAGGGGCAAGATTGGCCGCTGCTGCCAAATTAGCTGCTGCCGCAGCAGCTGCAGCTGAAGGGAAGGTCTTCACCTGCTTGGCTAACAATTGCTGCTGAATGTGCTGTTGAGCTGCCTGTTGCAACTTGCTGTATTTCTCCATTTCCTCTGGGGTAAAggtgattggttgactttctaAAGGTGCAAGACCATCCTCTTCAGGTTCCATGCCCATTTCCCCATCCTCCATGTTGGGAGGGTAACCAGGGTAGGCGTGCATAGTAGGCTGCGGACCCATTTCTGGCCCCATTAAATGTCCATCCAGCATGGGATTGTTGGGGTCTTGTCTGGGTTCACCTTGGTATTGAGACATCATCAGTGCTGGATCCTGTTCATATTGTGGTTGAGAGTCATGAAGGGCTGGAGGGTCTGAGGGTGGATGTCTGGTCTCCTCGGACACCGCTGCACTTGATACAGCCTCCTCCAATTGCTgcttttgttgttgctgctgctgttgctgctgctgaaCTGGTGGTTGaggtggaggaggtggtggtggaAACTCACGGATGGGTTCTACCAGGATAACCTCATTACTATCTGAAATTTTCCCTTGCTCTGACTTTTCGCCATCGGTTGAACGTGTAAGAGGAAGTAACGATGGCTTCTTTCCTGCTTGGAGCTTGCCAAAAAGGGGCaacatgcttttatttccaAGGGCAGGGGGGAGCTTGGGCCCAAAATATCCCTGTGGAGGGTCCTTGATTTTGAGGCCTGTCTTGGTGCCAGTACCAGATTCATCCCCTCCTTTTTTAGACTGGATTTTCTCCAAGAGTTGTCGAGCTGTGAATGAATTTCGATGCTCTGCTGCCCCTCCTCCCTCCTTTGACGAAGCTCCACCACCACTTCTTGTTCCTTGCGCTGATGACGAGTTACTGTTTCGAGTTTGTGTGCGGGAAGAGGACCTTGGAGACTGGGAACGGTAGATTCGTGACCGATTGAAATCTCTCCGCCGGGTTGAGCTGTCAGATCGTCGACTGTGACCGTGCCGATGTGGAGATCCCTTTGTGGAGCTAGATGAGCGACTAGCGGAGCTACGACTGCGACTGTAGCTGCTGCGTCTGTAAGAACGAGCGCTGCTACTCCTACTACTACGACTGGAGCTGCGACTACTGCTTCGTTGGTGTCTCCGCCGATGATGCTTCCTGCGGCTGCGTGAGCGGGAGCGGGAACGGGAGTCCTCCTCTGAAGACGAAGGGTGTAACGTCGCCTGTGGGATCGCCCACTATCACGCCTTTCATAATCCGAGTCAGAGGAAGGTCTTCTAGATCTGCGGCGACGTCCTTCATCGCTGTAGTCACTGTAACTGTCTGAATAGCTATGGCTACGGCGACTGTAAGCACTGCTCCCTGCTGAGGACCGCTCAGAGCTACTCGAGTAGGATCGACTGCGAGACTTTTGACCTCTGTGGCGTCTATGGTTGTGATCTCCTCGGCGAGATGACCTACTGCGTGAACGTCCTGATCTCCCAGAATCATCACTGCGATGTCTTCGCTGCTCACGTGGTGGCGTAGAACGACGCCGAGGGGGTCGAGAACGTTGAGAGGATGATCCACCATCCTCCTCACTGTCACTACTTGGAGGTCGACCTCCACTTATGCTCTTCTGGGCAGAGGCAGAGCAGGAGGCGGCAGGTGTGTTAGTGTCAGGTTTAAGACGTTTAGTACCATTGTGTTCCTCCGTAGAGCTAGGCTTTCCTGCACTGCTTTCCTCAACTCCAGACCACTGAGAGATTTTGTGGGAACGTTTTCTCTTTCCTCCTTCATGGGACGTGCTTACTCCCGATGACTGAGCAGTGGCTACTCCATCTTTGTCAtccttgtctttctctttttccttgcTGTCACCTCCCTCGGCTTCAATTTCATCAGTGCTACgtggtttgtttttgcttttctttcttttgtgtttctttttctttttagttttctcTCCTGGAATCTCATTTTCTAACTCCCCCTCCATGGCTGCTTTTTCTTTACGTTTGGAACGCTTGCTTGACTTCttgtgtttcttcttcttcttctttttcttagACCCTGCAGAGACATCTTCATTACTTTGTAATTTCTGCTCATTGTTCTCACTCTCAGCACCCTCCTCTTTCAAGGACGATTGTTCTTTTTGAACTGTACTGGATCCTGCAATCGTTGTAGCAGCGCAAGCCTCTCCACTAGTGGCAGGAGTATTGTCTGTGTTTTCAGGCTTAGACCCCTCTTGTCCTTCAGCGCTAACTGGCTTGGCAGGTTTGCTGTTTTTGCTTGCCCAGTTTCCTTTGTTTCTTGACAGTTTGAAGTCAAAGTAAAGAGGATTACAACTGTAGGAGAGGGATGGCTGAGCCTTAGTAAACTCCAACAATTCAGAAGGCCACTGCAGTGTGGTGCTTTCATCCTTGCTTAGCACAGGAAAGAAGGGTCCAGTTGGCATGCGGGGACCTGTGTCTGTATGCTCGGACATTACTTGCTTGGTATCAGTTTGTTGGGATGAGCTATCCACCACTATTGTATCACTTTGCCCTGCAGGTGTGATTCCTGATTCTTCCTCTGCCTTCACTGTATCTGATGTGGGATTTGTATTTTGGGCCTGTGGTGGTTCATTCTCAGTGTCTTTTTCAGATGTGCAGATGCTGATTTTGATATGCTTTTGCTCTCCGTCGTTATCTGATACTGCTTTATCATCTTTTGTCccatcttcctcctcttccttgCCATCACACTGGTCTGAAGCCTTCATGAAAAGCAGAAACTGGAAATGCGGCTTGACCCGACAATGTGCAGGTGGTACATAATGGTAATACTGTGGTTCCTGTCCAGAGTAACCTTCCTCctttttcatcatcatcttcagtTTGTTCAAAGTAGAGGCCAGGGCACCTCCATCATCTGGCTGTGACTGGTCTTCCTCCCCCCCACCACatccaccaccaccaccacctcctccttctcctcctcctcctcctgctgctgctgctgctgctgcttgaGGGATATCCGTGGTGGAAGCCACACCTATGTCCTCTGCTCCAGTCTTTTCTCCTCCTTCTTCCTGACCTTCTTCTCCTTCCACCATCTCCTCACCATGGTCTGCAAACACAGCAGCAGCCGTCTCAAGCTTGACTGGTGCTTTCTTAGCAAAAGAGAAGGAGACACTCACTTTGGGAGCCTGTGAGCCTCCAGAAGGAGAAGAGCTAGCTTTGTTAAAGCCAAAGCTGATGGCAGGCCCTGTTCTAGGGGAGCCTTGACCACTAACACTACAGATTCCTTTATCTTCAATAGCTTCCGTGTTGGTTTCCACTGTCATAGGCACTCCATCCATAGAGTCCTCACCCTTTTCTCCATCCACTGCCACTGTGGTAGTTTTAAACATAGGGCCACTACCAGAGaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29989 lncRNA upstream 77273 14379624 ~ 14457906 (+) True G20146
TU29987 lncRNA upstream 77273 14433705 ~ 14457906 (+) False G20146
TU29948 lncRNA upstream 230286 14303150 ~ 14304893 (+) True G20113
TU29877 lncRNA upstream 384221 14148464 ~ 14150958 (+) True G20057
TU29727 lncRNA upstream 412051 14120436 ~ 14123128 (+) True smim22
TU30016 lncRNA downstream 1854 14617262 ~ 14618834 (+) True G20166
TU30018 lncRNA downstream 11384 14626792 ~ 14629316 (+) True G20168
XR_006249714.1 lncRNA downstream 49434 14664842 ~ 14667052 (+) True LOC122338121
TU30044 lncRNA downstream 304837 14920245 ~ 14969285 (+) True G20180
TU30048 lncRNA downstream 355604 14971012 ~ 14971661 (+) True G20183
XM_043235900.1 mRNA upstream 79936 14440829 ~ 14455243 (+) True fmnl1a
XM_043234671.1 mRNA upstream 101587 14420262 ~ 14433592 (+) True LOC122341307
XM_043235239.1 mRNA upstream 133285 14397150 ~ 14401894 (+) True LOC122341695
XM_043234669.1 mRNA upstream 138034 14369095 ~ 14397145 (+) True LOC122341305
XM_043235863.1 mRNA upstream 207449 14313028 ~ 14327730 (+) True ezh1
XM_043235121.1 mRNA downstream 27557 14642965 ~ 14657476 (+) False map3k14a
XM_043235122.1 mRNA downstream 31113 14646521 ~ 14657476 (+) True map3k14a
XM_043235120.1 mRNA downstream 31296 14646704 ~ 14657476 (+) False map3k14a
XM_043233827.1 mRNA downstream 54073 14669481 ~ 14671559 (+) True rps11
XM_043229410.1 mRNA downstream 56909 14672317 ~ 14678865 (+) True hrob
XR_006248644.1 other upstream 267388 14255490 ~ 14267791 (+) False abcc1
TU29797 other upstream 415609 14118467 ~ 14119570 (+) True G20015
TU29734 other upstream 482147 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 621485 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 832826 13698574 ~ 13702353 (+) False rbbp6
TU30017 other downstream 3586 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 49511 14664919 ~ 14671568 (+) True G20172
XR_006250545.1 other downstream 50078 14665486 ~ 14665570 (+) True LOC122342199
XR_006250536.1 other downstream 50430 14665838 ~ 14665922 (+) True LOC122342189
XR_006250538.1 other downstream 51038 14666446 ~ 14666529 (+) True LOC122342192

Expression Profile