RNA id: TU30150


Basic Information

Item Value
RNA id TU30150
length 2471
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G20248
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14956739 ~ 14959287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGTCCACACGACAAGAAAGAGTTTGTCTGCTAAAATTACTGTTTAACATCATGAGTAGCTTCTTAGTTCACTGTTGTGTAAGTATGGACAGATGCTGTGGTTTACAGATCTATCTTTGACATATTAAGAAATCGTCAGTTTTAGGGCAAATAAGGATAAGACATTCATCCTCTACAGCCCGCTATTTGATTAGCAAATTGAATTGCAAATGaaacaactaaaaacatttacattcgGTCACAGATACTTTGCAAATCAGGAAAGTGTCCAGGCTGGATatctgcgttttttttttttttttttttttttaccatatttatagaataaaatataacacacattAAGCAACATGTGTCTGTATTAACACAATCACATGGCTCTCTCACATGCCACAAACAACCCATAGCACACATTCATTATTCTATTCCCTGTGgcaaaattgtaatgtttccgcccgtaatgttattatttaataaatttcgCATTACGATATAGGTGCAAATCGCGCTCTTAACGCTGCTGCCCCAGAACGAGGGCAAGAAAATAATAACTACTAATAAACCTCTAAGAAAAATCTCTGAGCATGGTTATTTATGACAGATATTTGCATACTGCCTCTAAGCTCAAATCTGATTGGACAAGGGGGCCCTAGGTCACATGTGAAAGCCTGGGCTTAATAAACCAGattaaaaaccttttctttatttatatgtagATTCCAAGAGCTCGTCAACAAATTTCTATTACTTATCTGCCAGCGGCCTTCATGTCTCAGAACAATTTATTCAAAAGCTTCTCCTACGGTTTTAACACACCAgctccgattttttttttttttactgaattttgcACCGGTCAATATTCTTAAATTGAATATTGAGGGGAGTTAAATTGAGAAATGCAATCAAGCTTAATCTCATCACCCAGAACTGACCCCTCTTTCAATATTTTCAGCCAAAGCACATTCTGCATGAATGATTTTGCCTCAGTTAATAAATTTCGGCTGAAATGCTGTACATGTTGAAGAATGAATGGGTCAACTGAGGCTTCATTCATACTGATGTACAGTGCAACCTCACATTTAGTTCGAGAGCAGAAAAGAACATAATCACACCTTTCAACTGTCTATCATCCATCATCAAAGAACACAGTGGGAACATAGTAAATATCAGATAACATATGGCAAATACAGTGTTAATAAACCGCAGCACAGATGAAGAGCTCTGAAATGATGAGACATAGACAACAGTATAGAGACAACTCACATAATAAACCACCATGAACGCTTCTAAATCCTTTATATGTTTGAAAATATCCCACTTACGATAACTTGGGAAGCAGAATCATGATGGCTGTCAAAAATGTATCTCATCAGCTTTAAACGACAAATTAATACctctcacatttaacaaaaagaaaaccgCTAGTTGTATCACTTTACTCTTATGCAGAAAgcgacaaaaacatttttttcgtGCGCTGTTCTTCATTTTTCAAATGGGATCCAGAAAGCATGTAGAAGAGCCATACGCTGCCAGAATGGGCTCATAATGGCTGCCATTGTACCGTGACCCATTCGGCTCGTCTACGAaggatagaaaaataaaaaggatagAAGAAAGGGGCTCTCAGTTTTATGATGCATCCCTGATACATCAAGAAGCCAATTGAGATGCAGAAACACATAGCAAACGAACAGCACAAGAAGACAAAACCGTCTCCACACGTGAGAGAGGATGACAAGTTTGAGAAAACCGCATTGTAACGCATGAAACCGACACATGCACAGTTAGAACAGTTTCACAACATTTTCTCCGTTAATAATTTACAGTGTTTTGGCAGTAGACTTCAAAATGGCGGCtgggcagagagagaaagagagaacgcGAGAACATGCCGAGGCCGTGCGCATCTGCAGTTCCTCACATGCTCGTGTTTTCAtgtctgtctttatttatttatttatttttacaagtgACTGTCCTGACGGGTCCACGGGCTTCTGCTTTCCTTCATGAGTCCGGAACAAACAGATGGTGTTTGTGAGAAACTTTGGGGTCCTCGTGTTTCTCGAGAAGCTCCTTGGCTTCCAGTTGTCATGTTTGTGCCAAATGATGACATGCCGGGAAAAAAGCAACAGAGACTTTTCCCTCGTTTTACTCTGTCCTTCACCCATTAGAGTGGAGTGGCCCGGCTCCCCCTGTAGGTCTGGAGGGGTTTACGGTGCTCAGCAGGCAATCTCCTCTAGCGTGCCCAGGGTGGTCTGGAGGAACGCTGACCGTGTGGCTAATTGACTCGAATGGTTTACCACCGGATCACAGGTACTCtgagaaaaaacacagatgttAGCGTTCTTAAAACTGTGCGCCCGAGGCTCAACACAGTCATTCCACCCACTGTTCGTgatatctaaataaatgatttgaagCTTAGCAGGCAGTTATTTTTTACCACATCCTCTCCATgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30146 lncRNA downstream 104877 14849717 ~ 14851862 (-) True G20245
TU30131 lncRNA downstream 269303 14632214 ~ 14687436 (-) True G20233
TU30109 lncRNA downstream 285170 14665914 ~ 14671569 (-) False G20225
TU30110 lncRNA downstream 285170 14666252 ~ 14671569 (-) False G20225
TU30107 lncRNA downstream 285170 14669588 ~ 14671569 (-) True G20225
TU30157 lncRNA upstream 28990 14988277 ~ 14989991 (-) True G20253
TU30158 lncRNA upstream 28990 14988277 ~ 14989991 (-) False G20253
TU30330 lncRNA upstream 292808 15252095 ~ 15254617 (-) True G20344
TU30323 lncRNA upstream 321060 15280347 ~ 15333486 (-) True G20338
TU30340 lncRNA upstream 360423 15319710 ~ 15324611 (-) True G20352
XM_043233826.1 mRNA downstream 291906 14657730 ~ 14664833 (-) True baxa
XM_043234931.1 mRNA downstream 315611 14610261 ~ 14641128 (-) True gpatch8
XM_043234967.1 mRNA downstream 374976 14573762 ~ 14581763 (-) True arf2a
XM_043234764.1 mRNA downstream 452059 14465704 ~ 14504680 (-) False LOC122341419
XM_043235948.1 mRNA upstream 8638 14967925 ~ 14987140 (-) False mpp3a
XM_043235949.1 mRNA upstream 8638 14967925 ~ 14987140 (-) True mpp3a
XM_043235950.1 mRNA upstream 8638 14967925 ~ 14987138 (-) False mpp3a
XM_043234672.1 mRNA upstream 32756 14992043 ~ 15009115 (-) True si:ch211-198m17.1
XM_043235008.1 mRNA upstream 55658 15014945 ~ 15026960 (-) True znf281a
TU30091 other downstream 517198 14435150 ~ 14439541 (-) False mlx
TU30093 other downstream 517198 14436215 ~ 14439541 (-) True mlx
TU30094 other downstream 517198 14436215 ~ 14439541 (-) False mlx
TU30092 other downstream 519699 14436215 ~ 14437040 (-) False mlx
TU29676 other downstream 1150761 13805368 ~ 13805978 (-) True G19933
TU30272 other upstream 161519 15120806 ~ 15179228 (-) False plcd3a
TU30290 other upstream 183654 15142941 ~ 15145592 (-) False LOC122341947
TU30582 other upstream 639491 15598778 ~ 15600286 (-) False atp5mf
TU30746 other upstream 1491853 16451140 ~ 16451800 (-) True G20680
TU30805 other upstream 1756473 16715760 ~ 16729665 (-) False mafk

Expression Profile