RNA id: TU30157


Basic Information

Item Value
RNA id TU30157
length 690
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G20253
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14988277 ~ 14989991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggcctcggagaggctttttattaacaaaaatagtacaaaataaagtgtccaaggggaaaagtgtccaaataaaaggggaaactggtgccctcgttgtgcttctgggattgtggaaggtcaggtagtgttccaggggggcagggtccaggtaaggggcggagtccggcggtcgcacgcgctcccctctcctgttcgggggcgcgaggggcggcggcttcttccgcggcatctccgtcgcttctttcctccggtcgtcagagatttaggggatttaacggctcggcatcctggcccgtcagccgtatccgggtgcagtcgtcgcctggactgtacggggtcccacgacgcgcttgtctagcggcgggacgagctccttcacgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacaataaagaggaggggcagccgactcgtcaca

Function

GO:

id name namespace
GO:0051704 multi-organism process biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30150 lncRNA downstream 28990 14956739 ~ 14959287 (-) True G20248
TU30146 lncRNA downstream 136415 14849717 ~ 14851862 (-) True G20245
TU30131 lncRNA downstream 300841 14632214 ~ 14687436 (-) True G20233
TU30330 lncRNA upstream 262104 15252095 ~ 15254617 (-) True G20344
TU30323 lncRNA upstream 290356 15280347 ~ 15333486 (-) True G20338
TU30340 lncRNA upstream 329719 15319710 ~ 15324611 (-) True G20352
TU30352 lncRNA upstream 376145 15366136 ~ 15366451 (-) True G20363
TU30588 lncRNA upstream 645081 15635072 ~ 15637612 (-) True G20546
XM_043235948.1 mRNA downstream 1137 14967925 ~ 14987140 (-) False mpp3a
XM_043235949.1 mRNA downstream 1137 14967925 ~ 14987140 (-) True mpp3a
XM_043235950.1 mRNA downstream 1139 14967925 ~ 14987138 (-) False mpp3a
XM_043233826.1 mRNA downstream 323444 14657730 ~ 14664833 (-) True baxa
XM_043234931.1 mRNA downstream 347149 14610261 ~ 14641128 (-) True gpatch8
XM_043234672.1 mRNA upstream 2052 14992043 ~ 15009115 (-) True si:ch211-198m17.1
XM_043235008.1 mRNA upstream 24954 15014945 ~ 15026960 (-) True znf281a
XM_043234673.1 mRNA upstream 107928 15097919 ~ 15121776 (-) True svilc
XM_043235529.1 mRNA upstream 132555 15122546 ~ 15126368 (-) True cdk21
XM_043235528.1 mRNA upstream 136510 15126501 ~ 15130587 (-) True retsat.2
TU30091 other downstream 548736 14435150 ~ 14439541 (-) False mlx
TU30093 other downstream 548736 14436215 ~ 14439541 (-) True mlx
TU30094 other downstream 548736 14436215 ~ 14439541 (-) False mlx
TU30092 other downstream 551237 14436215 ~ 14437040 (-) False mlx
TU29676 other downstream 1182299 13805368 ~ 13805978 (-) True G19933
TU30272 other upstream 130815 15120806 ~ 15179228 (-) False plcd3a
TU30290 other upstream 152950 15142941 ~ 15145592 (-) False LOC122341947
TU30582 other upstream 608787 15598778 ~ 15600286 (-) False atp5mf
TU30746 other upstream 1461149 16451140 ~ 16451800 (-) True G20680
TU30805 other upstream 1725769 16715760 ~ 16729665 (-) False mafk

Expression Profile