RNA id: XM_043233692.1


Basic Information

Item Value
RNA id XM_043233692.1
length 4274
RNA type mRNA
GC content 0.45
exon number 15
gene id plcd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15120806 ~ 15179359 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggttCGAAACAGTCCAAAGCCTATTTTTGCGACACCTGTTCATCAGCTAGGCAGACAAGTTAAAATGCaggctaaaaataaaagtaacaaatcAGTTACACAATCAACTTCTCGCACAGTTGACCATGAAGCAGAGTCTGACACAGTAAACGAGTCACGGAGCGTGAGTTAATGACTCGTGTTCATCGGCGGAACACTTACCGTTCCTCGCCGTTTTTAGACGCGTCAAGCGTTACGACAGCCGtcactgcagcagcagcagcgcgagGATTCACATGCGCTGAGCCACACGTTAAAACGCGTTCTTCTGGATAGTTCGTGTCTATTGGTTATTCGCGTTTACCTCAAGAAGGCAGCAAGAACTTCTGCCTGGAGCCGAAGGGATATTCAACATGCTTGGGAGGAAGAAGAAACCAGAAACTGTTCAGACTGAACCCAAAGCGTACGAGTCGAAGACCCACGATCCGCTTCGGAGGCTTGGTGTGCTGGACGATGAAGATGTGCGGCTGATGCTGCAGGGGTCGAAGATGATGAAGGTTCGATCTCAGCGTTGGAGGAAGGACAGGAGCCTGAGGCTTCTGGAGGACTGTGTGACGGTGTGGTGCGAGTCCAGCAAAACCTCCCGCAAAGGCAAAAGACAGCAAACCTTCTGCGTGACGGAGGTGGAGTGTGTGCGGGAGGGCTGCCAGTCGGAGTGTCTGCGACGAATGGCTGGTCTGGTCCCAGAGACACACTGCTTCACTGTGGTCTTTCGCGGAGCAAGGAAGAGCCTGGATCTGTGCTGCTCCACACAGGACGAAGCGGAGGGCTGGGTTCGAGGCCTCCGCATTCTCAAAGACCGCGTCTCCAACATGAGCCAGAAAGAAAAGCTGGACCATTGGATTCGAGGCTATCTGAGACGTGCGGATCAGAACCAGGATGGGAAGATGAGCTACGACGAGGTGAAACATCTGCTACAGCTGATCAACATTGACCTGAACGAACAGTATGCACGCACACTCTTTAAGAAGTGTGATCGCTCGTGTGATGGGCGACTGGATCACGTGGAGATCGAGGAGTTCTGCCGTGAGCTGATGCGCAGGCCGGAGCTGGACGCTGTGTTCAGGCATTATTCTGGTAACGGGTGTGTGCTCACCACCTTGGAGCTGAGGGATTTTCTCGGGGACCAGGGTGAAGACGCATCACTGGCCCATGCGAAGACTCTCATCCACACCTATGAGCTCAACGACTGGGCCCGGAAGAATTTGTTCATGACCCAGAACGGTTTCACCATGTACATGCTCTCGAAAGAGAACGATGTGTTTAACCCGGATCATGCCCACGTGTATCAGGACATGAGCAGACCCCTGGCGCACTACTACATCTCTTCTTCTCATAATACGTACCTCACCAAAGACCAGGTGACCAGCGCCAGCAGCACAGAGCCTTACATCAGagcTCTGCATCAGGGCTGTCGCTGTGTTGAGCTAGACTGCTGGGACGGTGATAAAGGAGAGCCTATGATCTTCCACGGACACACACTCACCTccaaagtgctttttaaagaagTCATTGAGACCATCGCTCAGTACGCCTTCAAGACATCTCCGTATCCTCTGATCTTGTCCCTGGAGAATCACTGCTCAGTGGAGCAGCAGGCAGTCATGGCCCAGCACCTTCGCTCTATCCTGGGAAAGAAGCTCCTGAGAAAGCCGCTCAATGACCTGCCCCTCAAAGACCTGCCCTCACCTGAGGAGCTGATGGGGCGGATCCTGCTGAAGGGGAAGAAGTTAGGTGGTCTCCTGGGGAAGATTGACAGCTGGACTAGCTTCTCATACAGCTCAGATGAAGAGTCTACTGCTGGAGGGGGCGGCAACAAAAAGGAATCCAAAAAGGATCCTGGGAGGTCTGTGAGCACTAAACTGAGTCCAGAGCTGTCAGATCTGGTGGTGTATTGTCAGAGCGTGCCCTTCAGTGGTTTTGAGACAGCCAGCCAGAGACCTCCTGGCATGATGTCTTCTTTCTCTGAGAATGAGGCGCTCAAACTCATCAAAGACTCAGGGAAGCTGTTTGTTCGACACAACAGTCGGCAGCTGAGCAGGGTTTACCCCTCAGGCCAGAGGTTACAGTCCTCCAACTACGACCCCCAGGACATGTGGAACGGAGGCTGCCAGATGGTGGCTCTGAACTTCCAGACCCCAGGAGAGCAGATGGACCTGAATCAGGGCCGCTTTCTGCCCAACGGCCGCTGCGGATACGTGCTCAAACCTGACTTCCTGTGTCACCCAAAGTCCAACTTTGACCCCGAGAACACGGGAGGAGGGCCAGGACATATACCCACACAGCTAACAGTACGGGTGATCTCGGCCCAGCAACTTCCTAAAATAAACGCAGACAATCCCAACTCCATTGTGGACCCACAGGTCTGGGTGGAGATCCATGGAGTTTCCATCGATAAGGCTCGCGCAAAAACACAGCGTATTGACAACAATGGCTTCAACCCTCGCTGGGACTGTACTGTGAGCTTTCAGCTGCAGGTGCCTGAGCTGGCCTTGGTGCGTTTTATGGTGGAAGATCACGACTACAAAtccaaaaatgatttcattggCCAGTTCACTCTCCCATTCACCAGCTTACGaacagGTTATCGTCACGTTCACCTGCTGAAAGCTGACGGCTCCAGTCTGTCTCCTGCCACCCTCTTCATCCATATCAAGGTGGTTCGGCGAGGAGTTCCTATTAAAACAGTTTCTGAGCGGCTTGGCAAGGCCTGAGGCTTCTGTTGTGATTCCTGGAAGTATTTATTTCTGGAAGTACCTTACTTAAGGAGAAGCCCCTGAGCTGGGCTCTCGAGGTGCTGGGACTCTTCAGAATGAGACCACTTGAAAAAGCATGTGAAATCGGACGTACAAGCACAACAATCTGCAGAAAGTCAGTGTAGACGTGTGATTCAAagtgcattttgctttttttttattgttcatttgtggTGTTGTCTGCAGAGCAGAACGTCTAAGCGTGTCACAGAAGTGTTACCGTGgaagttaaaaatgtcatgaAGTCAGTATTGTTCGATGTTACAAGTCAGTGTTGTTTATAGAGTCTGTTTCCATTGAGACCGATTTCTATTGAGTCTATGAGCCTTAcgaaaatgtaatcaaaatgccatattttaattgaacttAAACTAGTCTTTACATTAATTGTTTGTACATGTAGACAGAAATTAGCTGTCCCTaatgtttttatagtttgaATCTTTAATGTTTCTATAGTTTGAATTTTGCTGGTGGTTTTTTGATATGTTGTATGCTGACAGCCAGGTGAAGAAAgggaaaagaaagcaaaaaaaaacccttttgaaAGAATACTGGAAGCATAGCAAGTATATGGATGGTTTAGTAAGAGTAATGATTATGAATGAAGTATGTTTTAAACACCAACTGCGATTCAGCAGTATATTAGTAATATGAAGTCAGTAATTAAGTAATCAGAGTAGTAAGATGCTtatgaaatgataataataatatattaatacaattcatttgatagaaataatacattttaaatatttttaaactacgCTACCACTaacaatgaaatgtatttttaaccatGATTAGGAccgtttttatcatttaaagctAAAAGCAAGCGCTgaaattttcagttttgtagGATGTTCAAATTTAGTCAAATTCCATAACTTCACCTGTGCTACGTTAATGAAGACACAGGCAACAATAGCACTTTCCATTAGAATCATATTCAAGTTGTTGAATTGTGAAAATTTGTGATTATTGAACTCATAAAGATCTATGTTTCGTATTAGGCTTGATAATTAATTTATAGAAGCAGCTGACATTATACTAAATACGTGTTTTAAACGGagatattatttttctgttacaCAGTAGACAACACAACAGTCTTGATTTTAATGTCTTACTTGTTTATAGAGTACTGTATTTGGATGTTTGTGTATACCTGCATAATTAATtcgtttttaagttttattgaAATAGATAATCactaattaatgaaattaatatcaaaactatttttatgtcattaatatCAGACATCAATTGGAAATCTTTACACATTTAAGCATAGATACTAATTAGGTTGGATaaacatttttgcttgtttggtgatttttgaaaacatgaaGATGTGTGAATCAGTCTCCATTGTGCAGTTGTGctcattcattgtttttattgattcatGGAAAGATGTAGTGCCTTTGAAAGCATGCCTAGATTTTATAAAttcaaaaaatctaattgta

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30157 lncRNA downstream 168758 14988277 ~ 14989991 (-) True G20253
TU30158 lncRNA downstream 168758 14988277 ~ 14989991 (-) False G20253
TU30150 lncRNA downstream 199462 14956739 ~ 14959287 (-) True G20248
TU30146 lncRNA downstream 306887 14849717 ~ 14851862 (-) True G20245
TU30107 lncRNA downstream 487180 14669588 ~ 14671569 (-) True G20225
TU30330 lncRNA upstream 72736 15252095 ~ 15254617 (-) True G20344
TU30323 lncRNA upstream 100988 15280347 ~ 15333486 (-) True G20338
TU30340 lncRNA upstream 140351 15319710 ~ 15324611 (-) True G20352
TU30352 lncRNA upstream 186777 15366136 ~ 15366451 (-) True G20363
TU30588 lncRNA upstream 455713 15635072 ~ 15637612 (-) True G20546
XM_043233693.1 mRNA downstream 408 15149891 ~ 15158341 (-) True nmt1a
XM_043234674.1 mRNA downstream 10604 15146294 ~ 15148145 (-) True LOC122341310
XM_043235663.1 mRNA downstream 13141 15141817 ~ 15145608 (-) True LOC122341947
XM_043235662.1 mRNA downstream 17728 15138220 ~ 15141021 (-) True LOC122341946
XM_043235661.1 mRNA downstream 20855 15131415 ~ 15137894 (-) False LOC122341944
XM_043232014.1 mRNA upstream 1243 15180602 ~ 15243122 (-) False arhgap23a
XM_043232003.1 mRNA upstream 1243 15180602 ~ 15232705 (-) False arhgap23a
XM_043231987.1 mRNA upstream 1243 15180602 ~ 15214683 (-) False arhgap23a
XM_043231986.1 mRNA upstream 1243 15180602 ~ 15214683 (-) True arhgap23a
XM_043231994.1 mRNA upstream 1243 15180602 ~ 15214682 (-) False arhgap23a
TU30290 other downstream 13157 15142941 ~ 15145592 (-) False LOC122341947
TU30091 other downstream 719208 14435150 ~ 14439541 (-) False mlx
TU30582 other upstream 419419 15598778 ~ 15600286 (-) False atp5mf
TU30746 other upstream 1271781 16451140 ~ 16451800 (-) True G20680
TU30805 other upstream 1536401 16715760 ~ 16729665 (-) False mafk
TU30968 other upstream 1859831 17039190 ~ 17042336 (-) False snn
TU31152 other upstream 2484146 17663505 ~ 17691189 (-) True h3f3a

Expression Profile