RNA id: XM_043235355.1


Basic Information

Item Value
RNA id XM_043235355.1
length 3263
RNA type mRNA
GC content 0.47
exon number 5
gene id fscn1a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15706936 ~ 15744194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCATTTGGAAACGAAGCATTTTTGTTAAACTCTTTCACAAGTGAAAATATCATCCAATTCTGTGTTTCCCGACTCATTTTGGTACGTGAGAGAGTGATGAAGGAAGGCGGGACGGCGCGTGTGACATCACTCATCTGTATAAAAGCCAcagctgtgtctgtgtgctCGCGCTGTGaggctgcagagagagagaggcgcgCGCACGCTCGCTCCTTCAAACAAAGAGACCCGTCAACATCATCAACGGTGCACCAGCAGAACCCATTCCAGCAAGGCCGAGAAGAAACATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGACTGATCAACTGTGGGAACAAGTACCTCACGGCTGAAACGTTCGGCTTCAAGATCAATGCATCAGCCACCAGCATGAAGAAGAAACAGATCTGGACCCTGGAGCAGAACGGCGACGACTCGAGCACGTTCTACCTGAAGAGCCATCTGGGGAGATACATAGCAGCTGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGAGCGAAGACTGTCGGTTCGTGATCACTGCACATGATGATGGGCGCTGGTCACTGCAGTCTGAGCCTCACAAGCGCTACCTGGGCGGCACCGAGGACAGAATCACCTGCTTCGCCCAGACCATCTCCATCGCAGAGAAATGGAGCGTGCACATCGCCATGCACCCCCAGGTCAACATCTTCAGCGTCACCAGGAAAAGATACGCGCACCTGAGCACCGAACAGAGCGAGATCGCCATCGACCGAGACGTTCCCTGGGGCGTCGATTCCCTCATCACCTTGGTCTTCCAGGACCAGAGGTACCACATACAGACATCCGACAACCGGTTTCTGAAGAATGACGGAAGCCTGTCCCCAAACCCCGACAAGAGCACGGGGTACACGCTGGAGTTCAGGTCCGGGAAGGTTGCCTTCAGAGACTGCACTGGGAAGTACCTGGCTCCCTCCGGTCCCAGTGGAACCATGAAGTCCGGTAAGAGCTCGAAGGTTGGCAAAGACGAGCTTTTTGTCCTGGAGCAGAGCCACCCTCAAGTGGTCCTCACCGCTGGCAACGACAGGAATGTGTCCACCAGGCAAGGCATGGACCTCTCGGCCAACCAAGATGAAGAAGGTGACCAGGAGACTTTCCAGATGGAAATCAGTAAGGACACAAAGAAGTGTGCCTTCAGGACCTGCACTGGCAAATACTGGACCCTCACAGCTAATGGTGGCCTTCAATGCACTGCCTCTACTAAGTCTGCTAACTGCCACTTTGACATTGAATGGCGTGGGAAGAAGATAACCCTGCGTGCCAACAATGGAAAATATGTGGCTGCCAAAAAGAACGGACAGCTGGCTGCCACTATTGACACAGCAGgtgaGACCGAGGAGTTCCTGATGAAGCTCATCAACAGGCCCCTCATCGTGCTGAGAGGAGAGCATGGCTTCATTGGCTGCAGGAAGGTGACCGGCACCCTGGACTCTAACCGCTCGTCATATGACGTCTTCGGGTTGGAGTTCAGAGATGGAGCCTATAGCCTGCGAGACTGCACAGGGAAATACTGGATGGTGGGCAGTGAGTCGAATGTGCTGAGCAGTAGCGACACCCCGGTGGACTTCTTCCTCGAGTTTTGCGACTACAACAAAGTGGCCATAAAGTCAACCGAGGGGAAATATCTGAAGGGCGATCACGCAGGTGTTCTGAAGGCCAACGCCGACGATCTGGACACCTCCACTATGTGGGAGTACTAAAAGCACTTAAGTAACCACTGTGGCTTTTTCTTTCCAGTTTTTCCCTTTCTGTTATGCGTTTTGAATATGGTTTTTGAATACAAGTGAGCACACAGGCCGATAGCAGAGAGAAACCCAAAGGTGAAGGGTCTTGCTTCTAGTCACGTATACTTGATTCTGTCTGAATacttcagtgtttgtgtgccACCTCATTACCGCAGCGTGGTGCGCTTTTCATTGACGGTGAGTGGCCAAAACTGGGACCCAACTGGCATCCAAATTTGTGTTGTGTGGTTAAGCACATCTAGTTTCATCTCATACTAATCGACAAGTCGGTTTGCTCTCTGGAAGATCGACTATGCGGGCGACACAGGATTTTGATGTACCAGATTGTAGCGTGATCCCTCTTCCTAGTCTTTGCACAGTCCTGTATGAGCCTCGCACTCTTGATATTAACACATAGCAAAATATGTTAAAGAAAACCTTGTGACTGTGAGCTATTGATGATGTAATGCCTCCCACTGTATTGCCAGTCATAAGTACCTACCCTCATGACCCGAGGACTAAGGCAATATTTACAGGTAAATGTATGAatgtttagggtttttttttttttctttctatacaCTTGACAGAGTTATGAAGGAAGCTCTCGGGCCACTGAAAAGGCgttgagctttttttttgtttccagtgTTTGAAGTACGGCAGTGCTTTGTGTACTGCCTTGCTATCTGTGCcattagaaataattttaatgtttaaaaaaaaaaaaaaaaaaaagaggaagaacCAAGAAAACTGGATTGGTACAGTACAGTCCCTCATCTCAAAATTAGGGTTACGTTTGGAACTGCAAATGGGCgggtggggaaaaaaagtatagaTATTAAAGTGGAAATAGTTTTCTGCAACTCGAAagtgatgtcattgtgtgtgaagATACTGACGTGTGGTATGTTGTTGCAGGTTCAACACAGTATTTATGCTAAATTAAACCACTTTTCCCCTCTTAACTGGACAAATCTTAAAGGAATGGCGGGTCTGGCTTCACTGGACTCGTGCAGTGGTCTAATCTGGAAATATCACTtaacgctttttttttgttgtttttgagcaGGCACAGACATTATCATAAACCTTATTCCTTTAAACACATTACACCAAAATGAAGACATTAACACGCCACATAGGATTGCTTAAAGATTTAAACGTGCGATTAAACTGGTGCTTAATTAGTTTTCAGGTGTGCATCAAACTAACCGAACCACTCTGAGCTTAACTGCTCATTGTTTTAAGAACAGAGCCATCATTTCACAAGACAATGACCTCCCGTTGCTAAGGGAATGATAATGACTGTGCCTTAAAAGACCATTATGGGGGGGAGGGAGACATTCCACATTATACTTTGTAAAGTctttacaaatgtctttttatattgttttgatatTATGGTTATGTTTCCTCATGTGCCATGGGTACAAATGAAATCtggaaataaatacagtttgaaTATGAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K23551 FSCN1; fascin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30436 lncRNA upstream 9469 15716197 ~ 15727870 (+) False LOC122334397
XR_006248753.1 lncRNA upstream 11983 15714732 ~ 15725356 (+) True LOC122334397
XR_006248755.1 lncRNA upstream 16036 15720247 ~ 15721303 (+) True LOC122334400
TU30422 lncRNA upstream 148530 15587212 ~ 15588809 (+) True G20415
TU30245 lncRNA upstream 460647 15276294 ~ 15276692 (+) False zgc:165423
TU30474 lncRNA downstream 117819 15862013 ~ 15864962 (+) True G20452
TU30488 lncRNA downstream 128608 15872802 ~ 15873925 (+) True G20465
TU30489 lncRNA downstream 129839 15874033 ~ 15875311 (+) True G20466
TU30490 lncRNA downstream 130628 15874822 ~ 15875959 (+) False G20466
TU30492 lncRNA downstream 133995 15878189 ~ 15878426 (+) True G20468
XM_043235658.1 mRNA upstream 39965 15639017 ~ 15697374 (+) True tnrc18
XM_043228555.1 mRNA upstream 119275 15608385 ~ 15618064 (+) True slc29a4a
XM_043228563.1 mRNA upstream 119275 15608385 ~ 15618064 (+) False slc29a4a
XM_043228571.1 mRNA upstream 119275 15610502 ~ 15618064 (+) False slc29a4a
XM_043234637.1 mRNA upstream 138627 15595214 ~ 15598712 (+) True cpsf4
XM_043235664.1 mRNA downstream 75460 15819654 ~ 15823435 (+) True arpc1a
XM_043230754.1 mRNA downstream 79582 15823776 ~ 15828983 (+) True arpc1b
XM_043230767.1 mRNA downstream 90889 15835083 ~ 15846966 (+) False mmd2a
XM_043230786.1 mRNA downstream 93232 15837426 ~ 15846966 (+) True mmd2a
XM_043230776.1 mRNA downstream 93715 15837909 ~ 15846966 (+) False mmd2a
TU30209 other upstream 552466 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 568081 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1066659 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1070810 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 1071417 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 435716 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 946509 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 946509 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 953805 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1261720 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile