RNA id: XR_006248753.1


Basic Information

Item Value
RNA id XR_006248753.1
length 1479
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122334397
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15714732 ~ 15727870 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAGCCAGACTGTTTGAAGAGCCAGGCCTAGGCGATTTTGATCAAAATCGGCCTTTTTGTTTGCGAATTTTAAAACGTTGCTTTCCGTATTCCCGTGTTTCTGTGTTTCAAAAAGGCTGTGCAAAGGTTACAAGTGCTAGTGTTGGTCATAGTGCTGGACATCTAATTGATCCTGTGTTGTGTTTACAGTCTAACACAACAGCATCTCTATCGGACTGGGGTCTTGTTACAGCAGATGTGCTTTTGTGAGTCCATAGTTCCCCTGAGGACCACCACCCTTCCCTGATTGGTCTGCCTTCCCCCACTTCGGCGTCCCCATCCATCTCTAAATAAGGAAGCAGAGGGATGAAGAAGGAAACAGGGTGAACTGAATAAGAATGGAAGCAAAGGGGAATCCAGAGCCTGCTTCAGGTCTGTGACAGCTATGCCCTAAAAAGGTAATCCAGTCTGTGGGCATGATGGGAGGGGCACTGAAGTAAAGAGAGAGGCAGAAGCACAGGCCAGGTAACAACTGTCTCCCTCTTGGAGCCGGTTGTCCTAACCAATTAGCTGCGGCCTTGTTTTACTTTATgactgtgtaaatatatatgggGAAGCCATCTAAATAGCTGTCCCATCGACCATTGTGACCATTGTATTACAGGTAAGCACTACCCTTGTCCCACCTATGCCTTTAAGGCATGTTGCAATGCCAAAAAAGGCAATTGAAAGTTGACAGCAGGGATTGGCAAAACACGTCTGGAAATTTTGATCCCGTCtttccctctgtctctctctctctctattttctcttttcactgtctctgtctctctgctccTCATTTCTTCTCTCAGAACGAGGGATTAGTGTACAGATATGATGAAAAATATGTGTTTGACCAGCTATATTCACAGAACCTGTACTGTGAACATTAAGGCTTCCAAAATAAGATGATATTTCCAGAATGGATGGAATATTTGGGTCAGATGTTCAGCTCAAGGGAAGAGCATGCTGAAATGACACATTTAccatattcaaatatttgtttgtgtttccagTGATTTCTATCTGTGATGAACACAGAAGCTATCTTGAGCAAAACTTGTTAATGGCAAATTGTAATTGGAGTCAAGTGtgatctcaaaaaaaaaaattattgtaatttatcaACTGTGTgttgaagtttttattttagtagcaacatatattttaatttcatatcgGTTATATGTACTGGTttgttgaaaaagaaaaaaaacgtggGCCAAGACTTGGTTCTGTTCACCAGCTGATTTGAAGGAGCAAGACCTGAGAAGTGAGCTCACAGTCAATTGTTAGAGAGGGTTTAAGATGACTAAATGATTGCTGAAGTTTAGTATACATCTCCAGAGAGGAGTCTGATGTTTAACTGGATGGATATTACATTCTGATTAAACATTATCTATAAGCTTTAAACATTCAATGTGCAGGAATAAATTGTTCATAGCAAggtcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30422 lncRNA upstream 125923 15587212 ~ 15588809 (+) True G20415
TU30245 lncRNA upstream 438040 15276294 ~ 15276692 (+) False zgc:165423
TU30185 lncRNA upstream 575832 15129681 ~ 15138900 (+) True G20269
TU30054 lncRNA upstream 721695 14990229 ~ 14993037 (+) True G20188
TU30039 lncRNA upstream 724740 14972299 ~ 14989992 (+) True G20179
TU30474 lncRNA downstream 136657 15862013 ~ 15864962 (+) True G20452
TU30488 lncRNA downstream 147446 15872802 ~ 15873925 (+) True G20465
TU30489 lncRNA downstream 148677 15874033 ~ 15875311 (+) True G20466
TU30490 lncRNA downstream 149466 15874822 ~ 15875959 (+) False G20466
TU30492 lncRNA downstream 152833 15878189 ~ 15878426 (+) True G20468
XM_043235658.1 mRNA upstream 17358 15639017 ~ 15697374 (+) True tnrc18
XM_043228555.1 mRNA upstream 96668 15608385 ~ 15618064 (+) True slc29a4a
XM_043228563.1 mRNA upstream 96668 15608385 ~ 15618064 (+) False slc29a4a
XM_043228571.1 mRNA upstream 96668 15610502 ~ 15618064 (+) False slc29a4a
XM_043234639.1 mRNA upstream 116020 15595214 ~ 15598712 (+) False cpsf4
XM_043235355.1 mRNA downstream 11983 15737339 ~ 15744194 (+) True fscn1a
XM_043235664.1 mRNA downstream 94298 15819654 ~ 15823435 (+) True arpc1a
XM_043230754.1 mRNA downstream 98420 15823776 ~ 15828983 (+) True arpc1b
XM_043230767.1 mRNA downstream 109727 15835083 ~ 15846966 (+) False mmd2a
XM_043230786.1 mRNA downstream 112070 15837426 ~ 15846966 (+) True mmd2a
TU30209 other upstream 529859 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 545474 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1044052 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1048203 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 1048810 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 454554 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 965347 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 965347 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 972643 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1280558 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile