RNA id: TU30474


Basic Information

Item Value
RNA id TU30474
length 1946
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G20452
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15862013 ~ 15864962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTGATCTCCGGGTCCCTCTCCAGAGCCTGATGAGGTGGTGTTAGCCAGGATATAGCCATTGGGGGAGCTGGTCGAGGTGGTCACTACACGAACCATGGTGACAGCTGGCGCCTGCTGCACCACATGGATGGCCTGACCAGAGGCCTGGGAGGAGCTAATGATGGAGGCCGGCATGTAAGCCACAGGCTTGGGTATCGCggctgaggactgaggtggcaCGGCCATGATTACAGGCTGAGCGCTCACTGGAGAGCCTTGGTGCACTCTGGGAGTATCGGTACTCTGGCACAGAAGCAAGCTTAGAACCAAAGTCATGCTCATGAGACACTGGTGATCCTTCCCGTGACAGACACTCAGGGGTCTGGAGGCCGCTCGAGTGAGGAGAGAGAAGGCCGGAGTGGGTGGGAGATGCTGGAGCACTCCTGAAATCAACACAATGTGTCAGTCATACGCCACATAAAAAATGTCTGTGAACACATGCTGTGCTACACATACATGTTCAGATGTTACTCGCAAAGCAGGGtccaaaaataactttttgccTCACCTGCCTAAATTGTACGGCAACATTTTccagcgtaaaaaaaaaaggtgcagaGACAACTTTCAAAAAGAACTTCAACTTCAACATTACAtcaaaaaactttttgtttgtgtgaactACTACTTTCCACTATGGATACAGATCTCAAGATCTCTTCAGATCTCTTGACAGTTTAACAGGGGAGCCTAAGCTTAGTAACCAAAAACTGCCCTTTAGATTTACCCAAAGCAAATGATATCTCATATTTAACCACTATAGAGACATCAGAAGATCTGGATGAGGTAAGGATGCTTCATGAGCTGAACGCTCGCTGACGCCCTGGAGCTCACGTCTCGGAAAATGTAGATTAGTACAGttatgcatttctttgtaaatacatttttaaatagacattATGAGCTAACAGCATATTTGAAGACTACACAAGTACAAGTACAAGCAATTCTCACCTAAAAAAGCTCTTGAAACTTTCATGACACAAAACATTTactatttgtaaaatgtattatttataatattttatttgatttgggaATCTGCCATGACTCTCTATGTTTACATGCAACCAAATAATCAGTTTTTAACTTGGACTGATGGCTCAATTAGACTAAAAAGCCTTCATGTAAACACCTTAATCGATCCAAATTAGCTtgattggaataaaaaaaaaaaaaacaacagttaatTTTGGACCCAAGTTTAATGCAAGAGTATACAGAGTGTTAAAAGCAGAGAGCATAAGGGTGGCTGTGACTGATGCTGCTTTATCAAATGGCTCCTTAACAAACAAATGACACGGATCAAATACAAAGAGGCGACACTTACTTCGTTCTGCCCAGTGAAGAAACAGACAGAAGGGGAATAAAAGGGGAAACAGAATAGGCTAAGCAGGCTTCTATTACATTAGAAAGTGTGAGTGTTATAAGGGGACAGAGGGTGAGTGCAGGGTTAGTGGGGGTCTGAGATGTCTCACCTTGAGGACATCGGGCCAAAGGGTGTGCGGAAACAGGACACTCCTCTCTGCCGGCGCTTTCTGAAGGCCTGCTCCACCAACTTGGACTCTGAAGAGGGGTCCACACGCCAGAACGAACCTTTTCCTGGCTCTTCCTGCGAGCGTGGCACTTTAATAAAGTAGCGGTTCAGAGATAGGTTGTGTCTAATGGAGTTCTGAAGTGAAATGAGATTAAGAGAACGCAAATTAGCGCACAAACATGACAGGCAAAGTAACCacaatatttagcaaataaCCCTACCTGCCAGCCTTTGTCGGCCGTCCTGTAGTAGGGGTAATGCTTGGTGATGTGAGCGTAGATGCCACTTAGTGTTAGCTGTCTGTCAGGGGCAGACGAGATGGCCTGGACTATCAGCTGAGCGTACGAGTATGGAGGTTTGGACTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30435 lncRNA upstream 117842 15706936 ~ 15744171 (+) False fscn1a
TU30436 lncRNA upstream 134143 15716197 ~ 15727870 (+) False LOC122334397
XR_006248753.1 lncRNA upstream 136657 15714732 ~ 15725356 (+) True LOC122334397
XR_006248755.1 lncRNA upstream 140710 15720247 ~ 15721303 (+) True LOC122334400
TU30422 lncRNA upstream 273204 15587212 ~ 15588809 (+) True G20415
TU30488 lncRNA downstream 7840 15872802 ~ 15873925 (+) True G20465
TU30489 lncRNA downstream 9071 15874033 ~ 15875311 (+) True G20466
TU30490 lncRNA downstream 9860 15874822 ~ 15875959 (+) False G20466
TU30492 lncRNA downstream 13227 15878189 ~ 15878426 (+) True G20468
TU30493 lncRNA downstream 14168 15879130 ~ 15879329 (+) True G20469
XM_043230767.1 mRNA upstream 15047 15835083 ~ 15846966 (+) False mmd2a
XM_043230786.1 mRNA upstream 15047 15837426 ~ 15846966 (+) True mmd2a
XM_043230776.1 mRNA upstream 15047 15837909 ~ 15846966 (+) False mmd2a
XM_043230754.1 mRNA upstream 33030 15823776 ~ 15828983 (+) True arpc1b
XM_043235664.1 mRNA upstream 38578 15819654 ~ 15823435 (+) True arpc1a
XM_043235413.1 mRNA downstream 285891 16150853 ~ 16175090 (+) True card11
XM_043234675.1 mRNA downstream 314658 16179620 ~ 16207846 (+) True gna12a
XM_043235238.1 mRNA downstream 347405 16212367 ~ 16221215 (+) True eif3ba
XM_043235826.1 mRNA downstream 357238 16222200 ~ 16229178 (+) True chst12a
XM_043235266.1 mRNA downstream 428260 16293222 ~ 16301224 (+) True lfng
TU30209 other upstream 677140 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 692755 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1191333 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1195484 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 1196091 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 314948 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 825741 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 825741 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 833037 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1140952 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile