RNA id: XM_043235516.1


Basic Information

Item Value
RNA id XM_043235516.1
length 2306
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122341847
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16453074 ~ 16455479 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTTAATAagagttaattttaatttattttgtttggtgttgcctttgtaatatttaatgtttaatgaccaAATTATTTTCGTTGTTTAtgggggacttttattttgaaacaaaacccGCTTTTCACAACGCACGGCGCTAAAGAGAAAAGGGGAATGGGAGAGTGAACGCTTCATGACGGCTTAAAACTCGTTCACGAAAGAGATGTAACAAGTTTATTTAGCAACCCCCCGAAAAGGCATAAGCTCTTACGGTGATTTCTGAAGACGAAagggaacagaaataaaagtctggAAACATCAGTAAAAGTTTCGGCCATCATTCGGACGGGGTCCGCTACAGTAAGAGCTTTACCTTCGCTGGTTCAGATCCTCGCCGCACGTGCTGACAGACGGATTCAACGTGACTAAAGGAAAATGGATGGCAGTACGTCAGAATCAGCGTGATGGTCTACGGAGCTGCGACGCTGTGCTGTAGTCGGCAAGTTAAGTATGGAAATTGAAACAGAAGAACAAATAACTGGAAGCCTGcttcagacagagacagaaaaggaaagggATCTAAATGGAGCGGATAAAGATAAAATTGCTGCAGAACGCCAGTGTCATGTACAAGACAGTGCAGAACTCCCTCGACGTTCCGAACGTACTTGTATGCCTACGGAGAAAATGCTTGCTTATCAGAAAGATGAATgctgtaagaaagaaaaaaggttaaTAACTTTGTATGAGCAATGGAAGTTAGATGCCCGTAAAGCAAGACAGACCTTAAAAACAGACATAACTGATAAGCAACTGGCTGAAATTGCTGACTCTCTTGAGGATAAAAGGAACTGTATTCTGAAACTTTTCAGTGACATAAGACAATATGTTACACCTGCTGCTGATTTAAGACGTAAAATTGATGCATGTGAAGCTGTGACCAATGATATCATCAAATTTGTGTATGACAGAATGACAACTGTAGATGGCGAGTTTgatgcagagagaaaaaaagtttgtctAAGTGAACTAAAAGCACATAGTTATGCTCGCTCTATATATGGTTCAACTGCTTCAAAAATGAGTGTCAGCATGCACTCTGGATCTTCTAGTTCTGCAAGCAAACGTGCAGATGCTGCAGCAGAGCTGGCTGCAAAAGAGGTTGAATACAAGATGATGGAAACGGAAAGACAACAAAAGGAGAGAATAAGAACCTTAGAAGAGCAACTCAGAAGAGAGTTAGAAACTCAAAAGTTTGAGCTAGAACGGCTGCAGGTGGAAAAGGATATTGAAGTTGCTCGTGCCAGAGTAAAATCCtatgatgaagaaataaaacaagagacaAGAAGTGAGTCAACACAGAATAAACAAGAAGAGCAGagaaacaaaatgttacatCAGCAAAGCAATGTTGTACAGTCAACACCTCTCAGTGAAGTAACTCATCTTGCTCAAGCAGTTCAGGACAGTATAGCCATTAACAGGTTACCCATACCTGAACCCGCAGTGTTCAGTGGAGACCCAATTCAGTTTGTAAACTGGAAAGCGTCATTTATGTCATTAATAGATAGAAAGGGCATCCCAGCAGCTGATAAactctattatttaaaaaagtatgtgaGTGGCTCAGCACACAAATATCTTGAGGGCACCTTTTTTCGAAATGACGAAGAAGCCTATAAAGATGCTTGGGACAAACTAAACCAAAGATACGGCCAACCCTTTGTCATTCAAAGAGCGCTTTCGGGATAAACTTTCCAAGTGGCCAAAAATACAATCCAAAGATGCAGAAAGTCTGAGAACATTTGCAGACTTCCTTAATGCCTGTTTGCAAGCCATACCTCATGTTAAAGGTCTGGAAATATTAAACGATTGTGAAGAGAACCAAAAGCTCATACAGAAACTTCCAGATTGGGCAGCTTCCAGATGGAACCGTCAGGTCACTACAGCCCTCATGAATGGAAAGGAGTTTCCAAGCTTTCATGACTTTGTCAATTTCATGTCAGCAGAAGCAGAAATCATGTGTAATCCCATCACTTCATTGCATGCTCTTCATTCTCGTGAGTTACCTCAAGACAGAAGGATCtcaaaggaaataaaagaaacaaagcaatTGTCTTTAAGACTGAAACAAttgtaaacaatgacagacaaACAGCAGTTAAAGAACAGTTAAAAGCACAGTGCATGTTGTGTGAAGATGACAAACATCAGCTTCATAAGTGCCTGAAATTCATGGAGAGGTCTTTAAAGGACAGAAGGGCCTATGTGAAAGATAACAAACTCTGTTATGGGTGTTTAAAACCAGGCCACTGTGCAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30697 lncRNA downstream 180550 16272279 ~ 16272524 (-) True G20645
TU30695 lncRNA downstream 183166 16269684 ~ 16269908 (-) True G20643
TU30679 lncRNA downstream 233817 16218246 ~ 16219257 (-) True G20627
TU30682 lncRNA downstream 236830 16214600 ~ 16216244 (-) True G20630
TU30675 lncRNA downstream 245255 16205369 ~ 16207819 (-) True G20624
TU30800 lncRNA upstream 235686 16691165 ~ 16699422 (-) True G20717
TU30801 lncRNA upstream 235686 16691165 ~ 16699422 (-) False G20717
TU30847 lncRNA upstream 327725 16783204 ~ 16783825 (-) True G20752
TU30848 lncRNA upstream 329511 16784990 ~ 16785208 (-) True G20753
TU30869 lncRNA upstream 414648 16870127 ~ 16871030 (-) False uncx
XM_043235517.1 mRNA downstream 2031 16449554 ~ 16451043 (-) True LOC122341848
XM_043235308.1 mRNA downstream 80635 16368873 ~ 16372439 (-) False nudt1
XM_043235307.1 mRNA downstream 80677 16368873 ~ 16372397 (-) True nudt1
XM_043233724.1 mRNA downstream 95542 16308421 ~ 16357532 (-) True ttyh3a
XM_043233725.1 mRNA downstream 95543 16308421 ~ 16357531 (-) False ttyh3a
XM_043235922.1 mRNA upstream 86869 16542348 ~ 16629156 (-) False elfn1a
XM_043235919.1 mRNA upstream 86869 16542348 ~ 16629156 (-) False elfn1a
XM_043235920.1 mRNA upstream 86869 16542348 ~ 16628718 (-) False elfn1a
XM_043235921.1 mRNA upstream 86869 16542348 ~ 16578932 (-) True elfn1a
XM_043225495.1 mRNA upstream 260242 16715721 ~ 16729689 (-) True mafk
TU30746 other downstream 1274 16451140 ~ 16451800 (-) True G20680
TU30582 other downstream 852788 15598778 ~ 15600286 (-) False atp5mf
TU30272 other downstream 1273846 15120806 ~ 15179228 (-) False plcd3a
TU30290 other downstream 1307482 15142941 ~ 15145592 (-) False LOC122341947
TU30093 other downstream 2013533 14436215 ~ 14439541 (-) True mlx
TU30805 other upstream 260281 16715760 ~ 16729665 (-) False mafk
TU30968 other upstream 583711 17039190 ~ 17042336 (-) False snn
TU31152 other upstream 1208026 17663505 ~ 17691189 (-) True h3f3a
TU31151 other upstream 1233900 17689379 ~ 17691189 (-) False h3f3a
XR_006250182.1 other upstream 1254315 17709794 ~ 17718609 (-) False LOC122340174

Expression Profile