RNA id: XM_043228944.1


Basic Information

Item Value
RNA id XM_043228944.1
length 774
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122331507
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16690703 ~ 16699482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAACTCACTGTCCAACAGACTGTCTCCGTTTCAGCGCGCATCTTTTTGCTTGCCACTGCGTTGGTGAAACGCATCCGCCGCTCGTCTCCGCTAAGGGATGTTTGTAAACGGACTCACATTCGACCAAAGAATATAACACACGACTTTAAACTAGCGGTGGAAGTAAATAATGGCTCCTCAACCCGCCATCCGATCTAGACAGACGGAAAAAACAATAAACGGAAACCCAACTCAAGTTGTCTGCACGGAGTTCAGCaactacatttttatagttttgacaCAATATGGTAAAATTGGGACGCTTGTATCTGTAACACCTGACACAAGGTCTGGTGATATCAGCCTTCCCATGTTCAGTACCAGAGTGCTGCTGGGAAAGGATGAGCCTCTCACACATGTCTACGCCAAGAATGTTGCAACGTTTGTCTCACAAGAATCTGGCAACCGACCGGTCCTGCTGGGCCTTTCACTTAAAGACAACAGCGCTGAAActatgaaaaatgttaaagataTGATCAAAGCCTGTCAGGTTTGGTAAACAGGAGGTTGAACGGTACTATTTCTGGATGAGGACAAATGACGTATCTGCAGTTTTTTTACAACGTAAATCATGACTAGCCGGAATGATCTCAAGTTCTGTTGCTATCGCACAGCGTGTGAAAAGCttgaatgttaaaattaaaactgctgTTCAAGATCACTTCTTTTTGCCTCTGTATAATAGATGTCTTTCAGATGCCCTGagattaaaattgtattttcttaccttttaa

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250530.1 lncRNA upstream 100745 16596292 ~ 16597215 (+) True LOC122342129
TU30709 lncRNA upstream 389942 16307798 ~ 16308018 (+) True G20656
TU30699 lncRNA upstream 405154 16292605 ~ 16292806 (+) True G20647
XR_006248599.1 lncRNA upstream 817291 15879468 ~ 15880669 (+) True LOC122333245
TU30493 lncRNA upstream 818631 15879130 ~ 15879329 (+) True G20469
TU30836 lncRNA downstream 84067 16783234 ~ 16783841 (+) False micall2a
TU30837 lncRNA downstream 85110 16784277 ~ 16784497 (+) False micall2a
TU30839 lncRNA downstream 87665 16786832 ~ 16787050 (+) True G20744
TU30900 lncRNA downstream 290045 16989212 ~ 17052645 (+) True G20798
XR_006250505.1 lncRNA downstream 308228 17007395 ~ 17019304 (+) True LOC122341954
XM_043235699.1 mRNA upstream 222771 16473822 ~ 16475189 (+) True LOC122341966
XM_043235845.1 mRNA upstream 235270 16461318 ~ 16462690 (+) True LOC122342073
XM_043235306.1 mRNA upstream 322469 16372769 ~ 16375491 (+) True mrm2
XM_043235305.1 mRNA upstream 328459 16359912 ~ 16369501 (+) True snx8a
XM_043235266.1 mRNA upstream 396736 16293222 ~ 16301224 (+) True lfng
XM_043225482.1 mRNA downstream 1254 16700421 ~ 16715677 (+) True tmem184a
XM_043233884.1 mRNA downstream 33195 16732362 ~ 16755909 (+) True ints1
XM_043233888.1 mRNA downstream 56886 16756053 ~ 16769443 (+) True si:dkey-43p13.5
XM_043233885.1 mRNA downstream 56886 16756053 ~ 16769443 (+) False si:dkey-43p13.5
XM_043233887.1 mRNA downstream 56886 16756053 ~ 16769443 (+) False si:dkey-43p13.5
TU30661 other upstream 492792 16179910 ~ 16205168 (+) False gna12a
TU30209 other upstream 1513087 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 1528702 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 2027280 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 2031431 14666446 ~ 14666529 (+) True LOC122342192
unassigned_transcript_287 other downstream 306747 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 413985 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 464534 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 1020015 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 1205437 17904604 ~ 17906643 (+) True polr3k

Expression Profile