RNA id: TU30904


Basic Information

Item Value
RNA id TU30904
length 237
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G20801
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17057704 ~ 17062823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATACATAGTGCGGTAACTTTCACAGGTGAAGTTTCTGGTGCCGAGGCAGGACAGGAGTCTTTGAGAGATGGATGGTAAGAAGGGGTTCAGTCGTCCCTGGAACCATGACTGGATGAAGACAGGATCCTTCAGTCTCTGGGGACTAAAGCGACTGATCCGGATGTCATCGATCACATCCAGCACATCGGACAGAGACACATTGCTGACACTGGGAGTCTGtaagtaaacatattttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30900 lncRNA upstream 5059 16989212 ~ 17052645 (+) True G20798
TU30899 lncRNA upstream 15300 17039191 ~ 17042404 (+) True G20797
XR_006250505.1 lncRNA upstream 38400 17007395 ~ 17019304 (+) True LOC122341954
TU30917 lncRNA upstream 38400 17007747 ~ 17019304 (+) False LOC122341954
TU30839 lncRNA upstream 270654 16786832 ~ 16787050 (+) True G20744
TU30935 lncRNA downstream 11799 17074622 ~ 17074824 (+) True G20829
TU30936 lncRNA downstream 12530 17075353 ~ 17075575 (+) True G20830
TU30937 lncRNA downstream 12965 17075788 ~ 17076174 (+) True G20831
TU30906 lncRNA downstream 45169 17107992 ~ 17108694 (+) True G20803
TU31064 lncRNA downstream 441073 17503896 ~ 17516429 (+) True G20908
XM_043235204.1 mRNA upstream 12412 17043049 ~ 17045292 (+) True litaf
XM_043235100.1 mRNA upstream 20217 17024634 ~ 17037487 (+) False zc3h7a
XM_043235101.1 mRNA upstream 20217 17024867 ~ 17037487 (+) True zc3h7a
XM_043235717.1 mRNA upstream 122185 16934133 ~ 16935519 (+) True LOC122341973
XM_043229195.1 mRNA upstream 154734 16895969 ~ 16902970 (+) True galr2b
XM_043235519.1 mRNA downstream 26991 17089814 ~ 17097965 (+) True LOC122341850
XM_043235518.1 mRNA downstream 26991 17089814 ~ 17097965 (+) False LOC122341850
XM_043235521.1 mRNA downstream 27819 17090642 ~ 17097965 (+) False LOC122341850
XM_043235913.1 mRNA downstream 50225 17113048 ~ 17116319 (+) False nsmce1
XM_043235912.1 mRNA downstream 50329 17113152 ~ 17116319 (+) True nsmce1
unassigned_transcript_287 other upstream 51719 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 358222 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 358222 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 358222 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 852536 16179910 ~ 16205168 (+) False gna12a
XR_006250523.1 other downstream 50329 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 100878 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 656359 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 841781 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 1011574 18074397 ~ 18075574 (+) False LOC122341796

Expression Profile