RNA id: XR_006250505.1


Basic Information

Item Value
RNA id XR_006250505.1
length 1534
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC122341954
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17007395 ~ 17019304 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGCTCGTGACGTACAGCGCGGAAGAAGAGCGATAtagaaaatacacacactctACGAAGCGAGCCATCAACGCAGTTTAGTGCAAATGAATTTAACTAACATGAcattccagtaaaaaaaaaaaaaaacactaaatgcatgGACACCACGACGAAAACGCTGTTTTGCCGACAAAACGGTGAAAAGCAGTCAACGGCCATAACCGACTTGGGGGTTTCTAAGAACGTCCCTTCCTAGTTTCTATATTTGGGAACGACTTCTAGGAAAATAGAAACTGCCAGCTCCGTATCCAGTTCCACGTGTTTAACTTCGCTCCCTTTTAAAGCGAAAGAAAAGCTTCGAGCAGCAGCGCGCCCGCACGTGCGCGGTTTTACATACCGCCGCCCATTGACGATCATTAATAGACCGGAGAACGTCGGCGAGGAATTTAGCGCACAATTTGGCGCGTGTTGCTGGGATCGGCATCTCCCCCTGCGCGGCCCCTCACCTAGCAGCGTGACCGCGAAGCGACGCGCGAGCAGAGAGATCTTAACATGCACGGAGTCAGTCCGCTGCTCATCTCACCAGCGGCGGCAGCACGTACGGCGCGCACTTAAAGAAACAACATCTGACTCGCACCGGCCACATGTTTCCTTCAACCCCGCGGCGCGTCTTTATTCGCTCGAGcttcCAGCAACCAGCTGCACTTCATGGCCATAGATAAAGAAAACCCCATGCGCAAGGAGTTAATAAGTCAAACAAGTAAGAGCATTGTCTACAATTTCAAGATGCTCTCGGAGGAAGTAAACAAGCAGAAATGCAGACGTGAAATTAAGAACCCTCTTCTTTACCCCCGTCCATGTGACAGCAGAGGCATATGACTTCCATAACTTCATTGCTCATTAACCGCTGATGCTAGGACACAATTGAGCGAGTGTTTGTGGAACTTACCCTAGATATTCAGATCTCAGTCCTTGGCTCTGGCTGTTGGGCAGATCTTCTCCTGTTTCAGATATCTTCACCCTGCCTGACAACAGACCGTGAGGACGCTCACATGAGAGCCCCTTGTGAGGAGTGAACTATGGGATACAAAGACCGGTTATGTCCATTTAAATCACTTAACAAACACCACAGCAAACAAAGACCGTGATTTACCATGGTGGCGTTATTAAATTACCTCTGCACATGAGCCAACAATTGAGTTATTTTTATAGACGTGTGCAGACAGTATAAGCGCTGTCTTTTGTTCCTTATTGACTTGGCCCACCAGATTTTGTATGTTCTTGAATAGAGCTAGCACCGGTTAGACCAAAAATACGCATAGGAAATAGTCATAGCAAAGGTATCCTTCAAAAACCAAATACTCCCTTTTAGCTAGGTTGCGCACGAACGACTTTAGGCTAGTCATTGTCTGGGCTTGACTGGGATGGGAAATGGTTTAAAAAGCCAATGcgtttataaaatatgtaattgaaatgttgattacatttgttgtatgttttaaaatgacgcTGATAACTATCAAACAATAAAGTGAAAACGATTAAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30839 lncRNA upstream 220345 16786832 ~ 16787050 (+) True G20744
TU30837 lncRNA upstream 222898 16784277 ~ 16784497 (+) False micall2a
TU30836 lncRNA upstream 223554 16783234 ~ 16783841 (+) False micall2a
XR_006250530.1 lncRNA upstream 410180 16596292 ~ 16597215 (+) True LOC122342129
TU30709 lncRNA upstream 699377 16307798 ~ 16308018 (+) True G20656
TU30899 lncRNA downstream 19887 17039191 ~ 17042404 (+) True G20797
TU30904 lncRNA downstream 38400 17057704 ~ 17062823 (+) True G20801
TU30935 lncRNA downstream 55318 17074622 ~ 17074824 (+) True G20829
TU30936 lncRNA downstream 56049 17075353 ~ 17075575 (+) True G20830
TU30937 lncRNA downstream 56484 17075788 ~ 17076174 (+) True G20831
XM_043235717.1 mRNA upstream 71876 16934133 ~ 16935519 (+) True LOC122341973
XM_043229195.1 mRNA upstream 104425 16895969 ~ 16902970 (+) True galr2b
XM_043235687.1 mRNA upstream 125314 16876854 ~ 16882081 (+) True zfand2a
XM_043235100.1 mRNA downstream 5330 17024634 ~ 17037487 (+) False zc3h7a
XM_043235101.1 mRNA downstream 5563 17024867 ~ 17037487 (+) True zc3h7a
XM_043235204.1 mRNA downstream 23745 17043049 ~ 17045292 (+) True litaf
XM_043235519.1 mRNA downstream 70510 17089814 ~ 17097965 (+) True LOC122341850
XM_043235518.1 mRNA downstream 70510 17089814 ~ 17097965 (+) False LOC122341850
unassigned_transcript_287 other upstream 1410 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 307913 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 307913 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 307913 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 802227 16179910 ~ 16205168 (+) False gna12a
XR_006250523.1 other downstream 93848 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 144397 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 699878 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 885300 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 1055093 18074397 ~ 18075574 (+) False LOC122341796

Expression Profile