RNA id: TU30936


Basic Information

Item Value
RNA id TU30936
length 223
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G20830
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17075353 ~ 17075575 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAAAGAAGCccagatattcaaatgaataatcTCAACAGCAATGATATGATTGAGTCCCACTATTTAATTCACTTACCCCATCAAAATTAGTATTCAAAGCTAGGAAATCTTCTAGACTCGCGCTAGCAGAGAACGTTTGGAAGTTCAGCAGAAGCCATTCCGAGGTGTTACTGACGACACAGccagctttaaaacaaaaactcgACATTAGCTAATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30935 lncRNA upstream 529 17074622 ~ 17074824 (+) True G20829
TU30904 lncRNA upstream 12530 17057704 ~ 17062823 (+) True G20801
TU30900 lncRNA upstream 22708 16989212 ~ 17052645 (+) True G20798
TU30937 lncRNA downstream 213 17075788 ~ 17076174 (+) True G20831
TU30906 lncRNA downstream 32417 17107992 ~ 17108694 (+) True G20803
TU31064 lncRNA downstream 428321 17503896 ~ 17516429 (+) True G20908
TU31072 lncRNA downstream 477799 17553374 ~ 17563364 (+) True G20915
TU31095 lncRNA downstream 496555 17572130 ~ 17572473 (+) True G20927
XM_043235204.1 mRNA upstream 30061 17043049 ~ 17045292 (+) True litaf
XM_043235100.1 mRNA upstream 37866 17024634 ~ 17037487 (+) False zc3h7a
XM_043235101.1 mRNA upstream 37866 17024867 ~ 17037487 (+) True zc3h7a
XM_043235717.1 mRNA upstream 139834 16934133 ~ 16935519 (+) True LOC122341973
XM_043229195.1 mRNA upstream 172383 16895969 ~ 16902970 (+) True galr2b
XM_043235519.1 mRNA downstream 14239 17089814 ~ 17097965 (+) True LOC122341850
XM_043235518.1 mRNA downstream 14239 17089814 ~ 17097965 (+) False LOC122341850
XM_043235521.1 mRNA downstream 15067 17090642 ~ 17097965 (+) False LOC122341850
XM_043235913.1 mRNA downstream 37473 17113048 ~ 17116319 (+) False nsmce1
XM_043235912.1 mRNA downstream 37577 17113152 ~ 17116319 (+) True nsmce1
unassigned_transcript_287 other upstream 69368 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 375871 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 375871 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 375871 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 870185 16179910 ~ 16205168 (+) False gna12a
XR_006250523.1 other downstream 37577 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 88126 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 643607 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 829029 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 998822 18074397 ~ 18075574 (+) False LOC122341796

Expression Profile