RNA id: TU31020


Basic Information

Item Value
RNA id TU31020
length 605
RNA type TUCP
GC content 0.62
exon number 2
gene id LOC122341316
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17137930 ~ 17200630 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCTCAGTcctgtcagcccccGAAAccctcgccggaagaggcgagaagggagaggaaaccgccgccctgccgttctcctagcatcggacagcggaagagatggtgagtcccctcctcctacaactaatgttttctttgatgtgttccaacaggtagtcggagggggctcgttcggccgggctcagcgggaggatgaccggctcaagaattgctggaaccaggtacatttcatggatggagaggagacgcggcccggcccccatcctcttccccactttattgtggagaacggcctgctctattgtgtcgcccggcggaggggggaggagaaacggctcctggtggtgccccgagggaaagtggacaccattttggagctcgcccacgcccacccgctggccggacacctcggggccgccaacactatcaagaggatccgggaccgtttccactggccggggctcGACGGAGACGTGAAACttttctgccaggcctgcccagagtgccagaagacctcgccccggccacctccccctagtccacttatcccgctgcccataatcgaggtgcccttcgagcgcatcgggatggatctggtgggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30906 lncRNA upstream 55007 17107992 ~ 17108694 (+) True G20803
TU30937 lncRNA upstream 87527 17075788 ~ 17076174 (+) True G20831
TU30936 lncRNA upstream 88126 17075353 ~ 17075575 (+) True G20830
TU30935 lncRNA upstream 88877 17074622 ~ 17074824 (+) True G20829
TU30904 lncRNA upstream 100878 17057704 ~ 17062823 (+) True G20801
TU31064 lncRNA downstream 308012 17503896 ~ 17516429 (+) True G20908
TU31072 lncRNA downstream 357490 17553374 ~ 17563364 (+) True G20915
TU31095 lncRNA downstream 376246 17572130 ~ 17572473 (+) True G20927
TU31137 lncRNA downstream 454883 17650767 ~ 17651301 (+) True G20953
TU31133 lncRNA downstream 493531 17689415 ~ 17690288 (+) True G20951
XM_043235913.1 mRNA upstream 47382 17113048 ~ 17116319 (+) False nsmce1
XM_043235912.1 mRNA upstream 47382 17113152 ~ 17116319 (+) True nsmce1
XM_043235519.1 mRNA upstream 65736 17089814 ~ 17097965 (+) True LOC122341850
XM_043235518.1 mRNA upstream 65736 17089814 ~ 17097965 (+) False LOC122341850
XM_043235521.1 mRNA upstream 65736 17090642 ~ 17097965 (+) False LOC122341850
XM_043230135.1 mRNA downstream 185899 17381783 ~ 17384185 (+) True LOC122332748
XM_043230820.1 mRNA downstream 227404 17423288 ~ 17449492 (+) True hs3st2
XM_043235997.1 mRNA downstream 370379 17566263 ~ 17570451 (+) True ube2ia
XM_043225571.1 mRNA downstream 382856 17578740 ~ 17622221 (+) True baiap3
XM_043234016.1 mRNA downstream 462550 17658434 ~ 17668692 (+) True gpr146
XR_006250523.1 other upstream 46660 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 157716 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 464219 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 464219 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 464219 16697999 ~ 16699482 (+) False LOC122331507
TU31132 other downstream 523298 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 708720 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 878513 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 901761 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 1210082 18405966 ~ 18425076 (+) True nubp1

Expression Profile