RNA id: TU31095


Basic Information

Item Value
RNA id TU31095
length 344
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G20927
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17572130 ~ 17572473 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCTGTGGATTTTTACAGTAACCTTGTTGATTGCCATCTTTGGGTAGCTGGTTAAATGAGATTAACACACAATGCAAATGGCAGTTCTGCAAtgcaaattaaatcattaacaGTGCTCTACCCACATCCTCGACATCCGTTTCTGGAAAGGTGGCGTTGATTATTTTTCTCAGTCACGTTTCATAAATGTTGATTGCCATTTAGAGACCTTTTACTCCTGACATCAATTTCATTTCCAAATGACTTATTTTCTCTGTATCCAGAATTACCGCGCATAATATCCATTTAGAAATCGCCGGACGTAATGGGGGAAATTGTGCATGTTCAGATGTCACAGTCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31072 lncRNA upstream 8766 17553374 ~ 17563364 (+) True G20915
TU31064 lncRNA upstream 55701 17503896 ~ 17516429 (+) True G20908
TU30906 lncRNA upstream 463436 17107992 ~ 17108694 (+) True G20803
TU30937 lncRNA upstream 495956 17075788 ~ 17076174 (+) True G20831
TU30936 lncRNA upstream 496555 17075353 ~ 17075575 (+) True G20830
TU31137 lncRNA downstream 78294 17650767 ~ 17651301 (+) True G20953
TU31133 lncRNA downstream 116942 17689415 ~ 17690288 (+) True G20951
TU31199 lncRNA downstream 289594 17862067 ~ 17863081 (+) True G20994
TU31206 lncRNA downstream 328104 17900577 ~ 17901454 (+) False mrtfbb
TU31215 lncRNA downstream 352878 17925351 ~ 17929616 (+) False si:ch211-66e2.5
XM_043235997.1 mRNA upstream 1679 17566263 ~ 17570451 (+) True ube2ia
XM_043230820.1 mRNA upstream 122638 17423288 ~ 17449492 (+) True hs3st2
XM_043230135.1 mRNA upstream 187945 17381783 ~ 17384185 (+) True LOC122332748
XM_043234677.1 mRNA upstream 371500 17137930 ~ 17200630 (+) True LOC122341316
XM_043235913.1 mRNA upstream 455811 17113048 ~ 17116319 (+) False nsmce1
XM_043225571.1 mRNA downstream 6267 17578740 ~ 17622221 (+) True baiap3
XM_043234016.1 mRNA downstream 85961 17658434 ~ 17668692 (+) True gpr146
XM_043234017.1 mRNA downstream 85961 17658434 ~ 17668692 (+) False gpr146
XM_043234015.1 mRNA downstream 85962 17658435 ~ 17668692 (+) False gpr146
XM_043234014.1 mRNA downstream 106802 17679275 ~ 17685695 (+) True gper1
TU31020 other upstream 376246 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 455089 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 566145 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30774 other upstream 872648 16690703 ~ 16699482 (+) False LOC122331507
TU31132 other downstream 146709 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 332131 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 501924 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 525172 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 833493 18405966 ~ 18425076 (+) True nubp1

Expression Profile