RNA id: TU31152


Basic Information

Item Value
RNA id TU31152
length 3128
RNA type TUCP
GC content 0.38
exon number 5
gene id h3f3a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17663505 ~ 17691250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGAGACATTAAGTGGGAGAGATCGTGGTTCAACGAGAGACTGATAAACAATGGCTCGTACCAAGCAGACCGCGCGTAAATCAACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCGACTAAAGCCGCTAGGAAGAGCGCGCCCTCTACTGGTGGAGTCAAGAAGCCCCACAGATACAGACCTGGAACTGTTGCTCTGAGAGAGATCCGTCGTTATCAGAAGTCAACGGAGTTGCTCATCCGCAAGTTGCCATTTCAGCGTCTGGTTCGAGAGATCGCACAGGACTTCAAAACTGATCTGAGGTTCCAGAGTGCAGCCATTGGTGCACTTCAggAAGCAAGTGAAGCCTACCTTGTCGGTTTGTTTGAGGACACTAACTTGTGTGCCATCCATGCCAAGAGAGTCACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGGcataatttttagtttgtttttttgtttttgttttttattttaacttttaatgagAAACACTCAAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTCTAGATTTAACCATTGTAGAGCTCATTGTAAAGCGGCTTTAGTTGCATGCTTTAAAGTATTTATCACTTATCTTTTACATTGATCATTgggttgtaaataaaattactctACCTCAAAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcaatataTTAATAGATTGGTTTAGTTTAAAGGCATTCATTTACAAGATCAGGGGTGTCAAATCCTGTTCCAGAATGGTTCTCtttcctgcaaagtttagctcccACTCCCTTCTCGGGGAGGTTCAAATGATCCTCGAGATCTTGATTTTCTgcatcaggtgtgtttaattaagtctagagctaaactctgctgaAAGGTGAATCTCCATAAGCTGGGCTCCACACCTTTGGTGACACCCCTTGACACCAAGATTATGAATAGTTCACAAAAATGACTGTTATGAACAGTAATTGCATGACTTGTCCTTTTAAGCAACAGATCTGATAGCATTAGGCTTTCCTCTGCCCCCACCAGCTCTGGAGTTACCAAAGCAGGTATTAAAAGCAGTTGTAACAATCAATATTCTATGTAATACTGTTAAAAAGTAAGGTACATTTGCAGGATTGTGCTAACTTTCTCAAATTGCAAGACATAGCTATAGCTACCCATGTTATTTTACACATGGTGGCCGTTATAGCCATTGATATGTCCTGACAATGAGAGTATATATAAATTTtcaatttatataatatctCAATGGCTTTGCGAAAACTTTCTTGATGTTGTTTTATACCATAGTCCAGGAGAGTCCCAATCCTGGAGAGATTTGCCCCAAAATTGATTATAACTCATCCTCCTGTACCTTTCTTGTAACACTTAGACCTTGATTAGCTTTATCAGGTGTATTTGATTGGGTTGGAGCTGAAGCCTGCAAAGCTGTGGCTATCCAGGACCAACACTGACCACCCTTGTCTAACATCATCAGTGAAGAAAACTGAAACAGTGCATAAACAATGCAGGCATTGCATTACCATTAGATTGGAAGCACTTCTGAAACACCATTATTTCCACTTCATTGCAtcttaaagacaaaataaaactcAGCACAATGGGCCTCATTTATTAAACGAATGTAAGACAAAAAAGTGGGCGTACAGTCATTTCTACGCAAAACATGAGTGGTGACTACAATCAATCTGCTGGAGGTTTTGTAGGTTACTGATTTTTTATCCCAGTTACCACGTGCCATTGAGGTTCACgttataccaaaaaaaaaaaaaaaaaaaaaaaaaaggagcagcATTATAtgtcaacaaacatttctttccATAACAATAGGTTCCACCTCTACAGCTCAGCACCTTGGCTCCTTGGGCGGTGACAATACACGTGCTGTGACCAAAGGATGGTATAATTCAGCTCTGAAACTGTGGGGAGTGCAGATTTATGGCATGAGATGTGATGTGTCAAGGGTGCAGTGGATGCACAGTGTGAGGTTTGAGTTCAGGCTGAGGTCACAGCGCGGGCACACAGAGAGCGTTGCTCTGCAGTCCACTCATTAAAACATAACACTCACTCTCACATAACGACATACCACTCTTCCTCAACACAATGGCAACACTAGCCTCACTTTTGTATTTGCCTACAATGACACAAATGctacattattgttttatttaactcaaCTGGCTTTAtagatcttttttatttatttaaaaacaccacaaaggaaagctaaagaagaaaaaaaattggctACCTTGAGCAACCGCTCTTTTTATATGTGATCAGCATTTGTGCTAATCAAAATTGtttgtacttatatttatttgggATATTCCTAATCATAGTACACATGCAATTTATCATCTGAAATTACCACTACTACATTTGAAgtagcattttttaaacacaatttaagacatttttggatgaaaactgggaggcttgtgactgtcccattgactgcaatgtaatgaacactgtcaagatCCATAAAAGACAGTCAGAATAGTCCATGTGCCAGAAGCTTCAATCTGATTTTTATGAAGCAATGAAAATACTTTtgcatgcaaagaaaataaaaatcatgactttattcaacaatcgGCATCATAGCGTTACCATAGCCCCATTTTGGAAAGTATCCATTGaattcaaactaaaaaaagactGCGTACAAAAAGTACTGTTGTCACTTCATGACCTACATtttgatgatgtctttcatacttgaCAGTCAAAAGCCTCCCAGTATTCAtccaaaatgtcttaaattttGTTCTAAAAGATAAACAGAACTTTCAAGggattggaacaacatgggggtaagtgattaatgacacagttttcattttagtctgGATTAACactttaacaataattaaatgtaattatttacatgaCAATTATCAGCCAAACATgcaaattttacttaaaattattagtgaaaaaaaaaaaacaataataagctttttaagtgttcaaatcTCCAGAAGTCACACAGctatttaacaaacaaacacatatacacacatacatacatttatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31114 lncRNA downstream 90678 17572425 ~ 17572827 (-) True G20938
TU31113 lncRNA downstream 91468 17571711 ~ 17572037 (-) True G20937
TU31112 lncRNA downstream 91845 17571301 ~ 17571660 (-) True G20936
TU31103 lncRNA downstream 93050 17569568 ~ 17570455 (-) True G20933
XR_006250535.1 lncRNA downstream 162062 17499938 ~ 17501443 (-) True LOC122342167
TU31347 lncRNA upstream 388293 18079482 ~ 18101929 (-) True G21095
TU31677 lncRNA upstream 554129 18245318 ~ 18245622 (-) True G21317
TU31699 lncRNA upstream 739704 18430893 ~ 18431472 (-) True G21334
TU31706 lncRNA upstream 755060 18446249 ~ 18449094 (-) False G21340
TU31707 lncRNA upstream 757028 18448217 ~ 18449094 (-) True G21340
XM_043234991.1 mRNA downstream 97978 17559138 ~ 17565527 (-) True il21r.1
XM_043234993.1 mRNA downstream 104504 17553390 ~ 17559001 (-) False il21r.2
XM_043234992.1 mRNA downstream 104504 17553390 ~ 17559001 (-) True il21r.2
XM_043234904.1 mRNA downstream 112407 17539146 ~ 17551098 (-) False pdpk1a
XM_043234903.1 mRNA downstream 116576 17539146 ~ 17546929 (-) True pdpk1a
XM_043234008.1 mRNA upstream 15544 17706733 ~ 17718606 (-) False LOC122340174
XM_043234007.1 mRNA upstream 15544 17706733 ~ 17718605 (-) False LOC122340174
XM_043234006.1 mRNA upstream 15544 17706733 ~ 17718605 (-) True LOC122340174
XM_043234010.1 mRNA upstream 18492 17709681 ~ 17718608 (-) False LOC122340174
XM_043235894.1 mRNA upstream 27971 17719160 ~ 17721738 (-) True igfals
TU30968 other downstream 621169 17039190 ~ 17042336 (-) False snn
TU30805 other downstream 933840 16715760 ~ 16729665 (-) False mafk
TU30746 other downstream 1211705 16451140 ~ 16451800 (-) True G20680
TU30582 other downstream 2063219 15598778 ~ 15600286 (-) False atp5mf
TU30272 other downstream 2484277 15120806 ~ 15179228 (-) False plcd3a
XR_006250182.1 other upstream 18605 17709794 ~ 17718609 (-) False LOC122340174
XR_006250183.1 other upstream 18628 17709817 ~ 17718609 (-) False LOC122340174
TU31222 other upstream 229759 17920948 ~ 17921707 (-) True G21010
XR_006248684.1 other upstream 344321 18035510 ~ 18044587 (-) True LOC122333861
TU31705 other upstream 750696 18441885 ~ 18443195 (-) False dexi

Expression Profile