RNA id: XM_043235999.1


Basic Information

Item Value
RNA id XM_043235999.1
length 7408
RNA type mRNA
GC content 0.42
exon number 18
gene id mrtfbb
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17870177 ~ 17901491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAATAAGAGCGGCCATCTTTACCCGCAGCAACAACTGCTGCTCcggtaaagaaagaaaataaatgcccTGTCGGAATTTTATTGTATTCTGGATGTGTCATCAAAGCGAACACGTTTAATTCGGAAGCCAAACAGGCGACACCATGACCTAGTGATCGTCATAAGGAGCGCTGTGGCACAAAGCATCCTTCTCTTTTGACAGAGTGTAGTCCAAGATTCCAGCCAGTCGTCTGCTCCGCCGTGGTAGTTTCCAGGGAGAGACCCTCGCCTCTCCCCCTGAGGAGATATGGAGCCCCAGGAGAGTCTGGGAGTGGAGGGCGACCCGGGCGCACTGGGGGTGCTGGTGCCGAGCCCACAGAGCGAAGCGGTGACCCATGACCTGGAGGAATTGTCTCTGCAGCCCACTCAGAGCCTTCCACCCATTAAAGAGCGCAAGAATGTGCTTCAGTTAAGACTACAGCAGAGGCGCACACGCGAGCAGCTCGCAGACCAGGGCATCATGCCACCGCTGAAGACACCTGCAGCTTTTCATGGGCAGGTCAGAAGTCTGGAGAGGGCAAGGACTGAGAATTTCCTGAAGCATAAAATCCGCAGCAGACCTGACCGCGCTGAACTTGTCCGTATGCACATTTTACAAGAAACCCACGCAGAGCCTTCTTTGCAAGCCACtcagatgaaactaaaaagAGCACGTCTAGCAGATGACCTTAATGAGAAGATTGCACAGAGGCCCGGACCAATGGAACTGGTGGAGAAAAACATTCTGCCGGTTGAcgttgTTGGAGAACTGGATGTTTATAACTTCAATGAGGACAGCAGTGAAGCTCTGTCTCCAGAACAGCCAGCTAGTCACGAGTCTCAAGGCTCTGCATCTTCTCCCGTAGAAGCCAGACTGCCAGATCCATCGTCTGTTTCGCCTCCAACTGGCTCCAAACTCCAGACTTCAGACTTCTTGAACAGAACATCAGTAGAAGATGGTCGAGTAATGACTTCCTCTCAGACAGTCACTGCTGCTGCTCCCACAAAGCCTGCACCCACCCTTGTGAAGCAAAGCCAGCCCAAACAGTCCGGTGACAAGAGCCGAAGCAAGAAAAGTAAAGAACCCAAACCACGAATTAAGAAGCTCAAGTATCACCAGTACATCCCACCCGACCAGAAGCAGGAACCCAATGAAGCCCCGATGGACTCGGCATATGCCAGGCTGCTTCAGCAACAGCAGCAGTTCCTGCAGCTCCAGATCCTCAGTCAACAGCAACAACATTACAATTACCAGGCCATATTACCAGCACCACTCAAGCCTGTAGCTGAGAGTCAGAACAGCTGCCCCAACATCACATTGAGCACCAGCCCAAATCTTCCTGCTCCCATTGTGGTATCTCTGCCCAATGCGTCTCCTTCACGTCCCAACAACAACGTGATCGGTCGTAAAACCGGGTCTCTGCCTACCTACCTAGATGAGATGAAGGTGGCTGAGCTTAAAATGGAGTTAAAATTGCGGGGACTTCCTGTATCAGGCACCAAAACAGATCTCATAGAAAGGCTTAAGGCCCACCAGGAGAGCTCTCAGTCTGCTACAACCATGGATGCAAACATCTCCAAAGCTTCTCTGCAGCCTGACTGCATGAGCACTACTCCACCCATTTCTCCTGAGGCCTCCAACATCAGTATGGAGGACAGCAGAGACAGTCCCACCAAAGCTCTATGCACACTATCTCCAGCCCGTCCACCAACAGGTACCTCACCTTTCAAACCCACACCTGAAGACATGACCATGGACATCAAGGTGTCTGAAAAAGACCAGCGCCTTCACGAGAAGGAGCGGCAGATTGAGGAGCTCATGAGGAAGCTGGAGCAGGAGCAGCGGCTGGTGGAGGAGCTGAAGATGCAGCTGGAGGTGGAGAAGAGGATTCAGCAGGGAGGAGGGCAACAGCCTGAACCCAATCCATCAATCCAGGTCAAAGAGGAGAACAGAGCCTCCCCGAGCTGCAAATCCAAGCAGAGTCCCCTGCCGCAATCTACAGGTGGGAAACAGGAAGAGCCACATGCCCAGCAGCACCACACCCCAGTCCAGCAGTTCTATATCAACACCCAGCATGTCCCTCAAGTGCTGCATCAGCAGACACTGATCAAAACTCAGCCTGCAACGCAAATCCTGCTTCCCATCAGCCTGCCCAACAATCCAACCAGCACACAGCAGGCTAAGACTGTTCTCCAACCAGCAATGCCCAGTTTGGCTCAAGGCATCATGCAAACACCACTTCTGCAAACACAGACTTCTAGCAACACAATGTTACAACAGCATTCAAATCAGCCACCATCTCCACCTCAGGCTTTACCCCTGTGTGGAAGCTCGTCTTCTGGGTTTGAGTACAGGCAGAACCAGAGCCAGACCATGCCAGACGTCCCCCAGTGCTTCCTCAGCAACTCGCCCAGACACACAAATGGACCTGCTAACAAAccTCCCTCGCCCTGTCAGCTCAACTACATCCTTCAGCCATCGACATTCCCAAATCACCGCAGCCCAAAGAGCAAAGACCCACCCCGTTACGAGGAGGCCGTCAAACAGACCAGGGGGCTACAAGCCACAGTACAGGTTCCTACTGCTACCAGTCAGCACATGGACGATTTGTTTGACGTTTTGATCGAGAGCGGAGAAATATCCCCTCTGTCCAGGCAGGATCCTTCTCCGGACAAACTTCTTCCAGTGACAGCAAACATCACCACCCTGCCCATCAACACAGTGCTGTCTCGTCCTCCCCCGCAGATACACGTTGCCCGCACGCCCACAAACCCAGACACTCCACCCAACATGGTAGCCCTGGCCTCCGATAACCAGTTGGAGGCTCTTCTGGAGGACGCCGAGCCAAGGACCCTGAGACTGATGGAGGAGCTTAAAAACCAGCTGCTGGAGCGGCCACACTCGCCAATGGACACTTCAGATCTGACCTTCACCGACACGCCGCCCTCTGCCCTCCCTCTGCAAGACGCAGGCCTCGACAACATGGAGTGGTTGGACCTTACGATTGCAGGTCCTGCCGGTATCTCCTCACCGACTGCAGTCTTTTCATCTGATTTCTTGGACTCCACTGATTTACAGTTACACTGGGACTGAGCTCACCAAGGAATGGAGATTGGAGACGTTCTGAAAAGATCTGCGGTCGTGTCCGAGGATCTGCATGCAAACCACTGATAGCGTAGCATCAGCTTTTCTCAATTGCGCCTATATGTGCAGGATCGTGGGTGGCTATTGTCACAAACACCTCTTTCAAAGCAGAAGAAGAATGTAGAGACACCTTTTTTCACGTGTGTATTTAGACTGAGCTTCTGCTTTACATAATTTTGAAGCAGTCTTTGAAACTTATGGCCTATGTTATTTAGAAtgtcgttgttttttttaggttggGATAAGTTTAATTTCTTACCTAAGACAGaacatatttgaaatgtattatatattttggggAAAGTAAGGATTATAAGTACAATCATAGTGCCTTTGCTATTTGCGTTGTCCAGAGACTCTGTAGTTCAAAAAGTATTGATTTGTTCTCATTTGAaacttgtttctttctttccaaaCTCAAAAGAAAACCGTTTTGAAtcttatttagctgtttttcatCCCCATAAAAAGTTATGGTCCTACAAATTTTTAAGCTCCAAAAAGGACATAAAGGTAGCatgtgcttgtaattacactttttttttttttttttttttaagaaataattgtaaaaaaagaatatgagTAATAGTCACGAAAGTaataactgaagaaaaaaaattaatgattcATAAGTGCTATCCAGTGGTAAAAGTAGGTACTGAAGatgtaataaacataataataacaaaggaAATATTCAAAGCTTTCTGAAGCAGAATAATTGCTTTCTATGATAAACAAagtctttattaaatattctcaAACCATCCCAAAACATTAATCAGTGCATACACTAGAAGTAGACTAGAAGTTTGactaaagtattattattatttcattatttttagcttctttttcaGTAACATATTTCACTAAGATATGTCACAATGCAAAAGACTTTTAATCACTTTAAACTTCAAACCTTACTGAAAGTAAGGCTTATAAAGGCTTCAAAACTGCATATCATAGAAAACGATTCGtatgaattcatttaataattttcatgCCACCTTTATGTCGATTTTGAGGCTTGAGCCCATTAACTTAAAAccttctgaaaaacaaaaaatcatcGTCTTTGTTCTGTTAAGGAAAAAAAGCCATttgagtttggaacaacaaaaTGACACTTTTGACAATTTTACGGTTAACTATCCTTTGCAAATGTCAGACTTTTGAGGTGGAAACATTGTGCCGTGGTAATTGTTACAAATGTGATTTCACCTTCATTGAAGGAACCGGTTTAGTGGCTCATTTACATTCAACTGCCAGGGTCAATGAGCTGCTATCCGTTGCGTTAGGGTACTCGAAATCGTGGCAGCTAAATGATAACATTCAATTTCTAAACATTCGAAACCATCCAGTGCATAGACTTGGAAAGGTCAGAGCCAGGTTGTTTACCAAACCCAGCATGGGGccaaagagagggagggagagaggcaCACAAACGCCTGACTAGGGGCCATTATTATCCCTATCAAAAGATAGAGGGTTCGGCTCTTACAGTCTGAACTTGAACAGGGAAACAACGCTAAACAGGACCAGTGAAATTTTCATATTCAGATCAGAATGACATCAGAGAGCAGCTGCCGTTTGATTGGTCAGACTCTTTACTGCAGTACAGTAGACGTTTGTTCAGGTATAGATGTCCTGAAGTTCACTGTATTTGCTGATTTTGAGCATCTTTCTTCATAACCACTGTAATTTTGGTAGCTGGTAGGTAATTTGCCTTCGTTAATGTACCTAAACCTcatcttttctttatttgtaagaatgaatttgtttttggttttagatTCTTTTCTTCTATAGAATGTGACAATGTAGCGTCATCTGCTGGAACAGTTTGAAACAGGCCGAATGATTTTCCTATCACCACTTCCTTCAGATGGATcactatgaaatgtttttttgttgtttttttcagtgtttggcAGATTTAATAGCAGATCTCTCTTTAGACACTCTGTGAAAATATGCCAAACATGCCAGATAGTGCACTTACTTGACCTTGGACTGAACCCATTGACAATCAGTTCCTTATCCAAACATGTTGTCAAAAAGaatgtatttctatatttagaaatgtaatttctaaAGGGATGCCATACTTCTGTCTCTGTCGGAGACCCAAagcttttaattttgtaaacatGCCATTGTACTGCATTTGTGCAGTtctcatatatttttatcacaCATTTTATGGCtctacatgtattttttttaaagacccgTGGAGGAATAAAATCCTATCACAAGACCTTAAATCAACCCGTAAAGGTTTGCGTACCTTTTATGAATATGTTAATTGGAGCAATTGCTCTGTtatgaagaggaaaaaagagaaatctataaaatcttactgatccttTGAAGTGCGATGTAGATTGTATGCCTCATATTTTGcacagtgtatatatttttacaatatacattttatacaaatgtatttgtgcaactgtaaatgttttgaggttatatttgtacatatctttattgtgtatatacagCCTtgtatcattaaaatgtttctgtatttgaagGCATTGAAATGACTTGTTTTGAACTATTTTCTGAGCGCACATAGCCTTATTTAGAAAAGCAAACAACACAATAATTGAACAATTTACcaaagataatatttttttaacctaacGTAATGTAcaaaacaagataaaataatttttcttaccATACTCCACTACATGCAAACAGAATCATGCATTTGTTAAAAGTACCGCTGAATtcataaagatacattttacactttttaagtAAAGGAACCTTTAAGGAATAAATTGAAGGAAAccgttttcaaaatgtaaatgtctaaGTAGCAAAGAATGGCttgtattaataatactttCGAAAAGTACAGCTTTCAACTAACCTCCATtatttgtaacaaaataaatacagttttaaatagCTCTGCTCTTCTAACCACTAGAATATGGACGTTTTACTGCACCTTCTGATCACCCccaaaaaatgagaaatgtctaaacatccttaaatcaagatacatatatttaacaagTAAGTCTGAAGATGATTATAAGTCAAATTTGGTGAAAATCCGACCAGTTGTTTTGGAGGAGAGGCAGGTTTTCACCACAAGGTGGTGTCCTGAGTTTTGtaacaatatgctaatgttttggTAAAATATAGCAAAGCTAAagacaaaaatggcaaaacaatGTAGGAAAGGCCGGTATCAATCTCTACTTGGTATGCTGCACCGAACTTAAAGAGACAGTTGTGGTTTTGACCAAACTCTTCAAAAGTTATAAGCAAACATCTAATTGTTTTCACATCACCTGACAACTAGGTGGCGCTGTGCCCAAACTGTGCAGGTCATGGTTGTCATACCAAGTTTAGttgaaatatagaaaaatagatATTGCCtctcatacatttttatgtgcttttgaaTTAACTTGCTCATCGTTCAAGGCAAtttgttgtctgttttttttggAACAACTCAAAATGTTGGGAAAAATGTCATAATGGAAAAATACATCATAAGGAGCAATCAAATCATCTTCAGCCAAGGATGGTGAGGGCAGAAAAAGAACCATTGTTgggtttttcttttccttttacagattttattccTTAAAATAAACCTGAGTCGGTTTATTTGGACAGTTGGTGGCACTAGAGGGATTGTCTTAAGGACTCCAAATCTTAACttgcatttaaagtaaatgtatcttgattttCTACTCTAATCTAAGACCATTTTAAGGCCTTAAATCGTAAAAGACCTCTGCTTTAAGACCTCTAAAAACCTCAGAAACCCTGATTGCAACTTGATTCCATTTTTCAGTCCTTTAGCAAATACCCAACCCAAAATGGGGCACTGAATGGTTTTTAAGTTCAAATCAGTAGACTGAAATCTCACAGAAGACTCAGACATCTTACATTCTCCTTTAGGTATGGACAGTCCTGGAGGTAAGATTTAAGGCAAACAGAAAAGTTGGCTTAGTCCCCAAAAAGCGTGAAACATTATATCCTTAAAAAAAAGCCACTTTGAGTAATTCCATGGGCACTGTCCCGGTAAAACAATTTTATCAACCTTTCCAGTTCAGTTCACATTATGGGATTCAATCATTCCACTCCTCAGagctttttgcatgtttttatgtgACTTCGACATTTCGGACACTTGTGAACGACGTCTTTGCATCCATCCACGCAGAACGGGATGGCACAGCAGCCAGCTATACAAC

Function

GO: NA

KEGG:

id description
K22525 MKL; MKL/myocardin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31199 lncRNA upstream 7096 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 179889 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 218876 17650767 ~ 17651301 (+) True G20953
TU31095 lncRNA upstream 297704 17572130 ~ 17572473 (+) True G20927
TU31072 lncRNA upstream 306813 17553374 ~ 17563364 (+) True G20915
TU31215 lncRNA downstream 23860 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31270 lncRNA downstream 78676 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA downstream 134048 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA downstream 134048 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA downstream 137070 18038561 ~ 18041682 (+) True G21050
XM_043234012.1 mRNA upstream 154555 17691906 ~ 17715622 (+) False unkl
XM_043234011.1 mRNA upstream 161357 17691906 ~ 17708820 (+) True unkl
XM_043234013.1 mRNA upstream 161357 17691906 ~ 17708820 (+) False unkl
XM_043234014.1 mRNA upstream 184482 17679275 ~ 17685695 (+) True gper1
XM_043234016.1 mRNA upstream 201485 17658434 ~ 17668692 (+) True gpr146
XM_043236005.1 mRNA downstream 3093 17904584 ~ 17906183 (+) False polr3k
XM_043234678.1 mRNA downstream 19426 17920917 ~ 17929634 (+) True si:ch211-66e2.5
XM_043234071.1 mRNA downstream 30214 17931705 ~ 17954332 (+) True tyk2
XM_043234073.1 mRNA downstream 30225 17931716 ~ 17954332 (+) False tyk2
XM_043228458.1 mRNA downstream 53358 17954849 ~ 17970674 (+) True raver1
TU31132 other upstream 146754 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 674293 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 753136 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 864192 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30774 other upstream 1170695 16690703 ~ 16699482 (+) False LOC122331507
TU31207 other downstream 3113 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 172906 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 196154 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 504475 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 541899 18443390 ~ 18517665 (+) True G21124

Expression Profile