RNA id: TU31215


Basic Information

Item Value
RNA id TU31215
length 1310
lncRNA type sense_over
GC content 0.41
exon number 3
gene id si:ch211-66e2.5
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17920917 ~ 17929634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTGTTTCGGATAAAACGGAACTTTTAATGCCATGTTCCAAGTGTTACGAACGTGCAACAAGTGATGTAAATGTACCACATGCGCATTTTTCTAAAGTGTCTGCGTGGCAGCCTTTTTTAATGAACGTAAGCAGAATTTACATTTCGGGCAGATTTGGTGAAGATCATCAAGAAATAAGTAAACGATGACACAGTTGTCATTTTTGAGCAAACTATACTTACTATGCTTACTTGGTTACCAAGTGGCTTTTAACATGGTTACGCTACTAAAACAGGTCAACCTGCAACATATAAAACTAACcatataaaagcatattaagCTGGTCTAAActaatacgtttttttaaacgttAAATGCCTTTGTTTAAATTTGCAATTGTCTTTACGCAGAGAAACCAGACAGTGTTTCCATAAGTTTAGTGAATCACAGCAGTCCAGTGGTGGAAGGAAGAGAGTACCAGCTGCAGTGTGAGGTGCAGAACGTCGCACCTGTCCAGTACCTCGTTTTACGGTGGTACAAAGGAAAAAATGAGGTTTACAACCACTCGTTCTCAGAGTTATCCCCTGCAACACCAGTCCAGGTGTCCTCTATCTTGCTGATTGTCCCAAACAGAGCCGATAATGCAGCTCAGTACAGGTGTGAAGCACAGCTGGAACTTGGAGCAGAAGGACCTCAACCTCCTCCAACAGTTCAGTCTGAAGTTCTCAACATTGCAGTTCAATaccCACCGGACTTCCGCAGTCCAGGGGAAGAGATACTGGACATCAGTGAGGATAGTGAAACAGCGCTGGATTGTACTGCGGAGGGTAACCCACCTCCTGTGTATGTTTGGACCTCCTCAAACCTTCAGGAGAAGGCTGATAATCAGCCGGTTTTGAGAGCTGCATCTTTGAGCCCAGGGGTATATACATGCACTGCGTCCAATATCCTGGGGAAAAAGAGCAAACAGTTTGTCATCAAGCACAAATCCAAAGgtgTTTAAGTCCAGAGACCTTGAGAAAGAACCGAAGACTTACAGTTCTAGATGGAACGTTAAGGACTTTCCGGACGTGGGCTCGGCTCTTTGTTACATTTTAGATGAATTTTTAGAGGGCTCTCTTTTCAGGGGTTATGATTTGTTAAATATGAGAGTCAAACCTACATATGTGTCAAATCTATCCTAGTAAGCTTTATTAATATTGTGCGTGTGGTCACTTTAACAgagcatttttatgtttcatgaCACACTGCGATAGCTCTGACATTGACATCAATGTTTTTGTAGATATTTACTCACccaataattataacaataataaattaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31206 lncRNA upstream 23897 17900577 ~ 17901454 (+) False mrtfbb
TU31199 lncRNA upstream 62270 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 235063 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 274050 17650767 ~ 17651301 (+) True G20953
TU31095 lncRNA upstream 352878 17572130 ~ 17572473 (+) True G20927
TU31270 lncRNA downstream 50551 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA downstream 105923 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA downstream 105923 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA downstream 108945 18038561 ~ 18041682 (+) True G21050
TU31309 lncRNA downstream 186922 18116538 ~ 18119426 (+) True G21073
XM_043236005.1 mRNA upstream 19168 17904584 ~ 17906183 (+) False polr3k
XM_043235999.1 mRNA upstream 23860 17870177 ~ 17901491 (+) True mrtfbb
XM_043234012.1 mRNA upstream 209729 17691906 ~ 17715622 (+) False unkl
XM_043234011.1 mRNA upstream 216531 17691906 ~ 17708820 (+) True unkl
XM_043234013.1 mRNA upstream 216531 17691906 ~ 17708820 (+) False unkl
XM_043234071.1 mRNA downstream 2089 17931705 ~ 17954332 (+) True tyk2
XM_043234073.1 mRNA downstream 2100 17931716 ~ 17954332 (+) False tyk2
XM_043228458.1 mRNA downstream 25233 17954849 ~ 17970674 (+) True raver1
XM_043228451.1 mRNA downstream 25234 17954850 ~ 17970674 (+) False raver1
XM_043235392.1 mRNA downstream 50606 17980222 ~ 18026132 (+) False pde4a
TU31207 other upstream 18708 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 201928 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 729467 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 808310 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 919366 17005914 ~ 17005985 (+) True trnat-cgu_1
TU31290 other downstream 144781 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 168029 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 476350 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 513774 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 576514 18506130 ~ 18517665 (+) False G21124

Expression Profile