RNA id: XM_043234678.1


Basic Information

Item Value
RNA id XM_043234678.1
length 1792
RNA type mRNA
GC content 0.46
exon number 6
gene id si:ch211-66e2.5
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17920917 ~ 17929634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGAGTGTGTAAATCTTTCCTCCACAGAGACACCAGACAGTGTGTCCATCAGGACTGTGAATCACACAGGACCAATGATGGAGGAAGAGCAGTATGAGCTTCAGTGTGACGTTCTCGATGTGGCTCCTGTTCAGTATCTCACTGTCAAATGGTACAAAGGACAGACTCTGCTGAAACAAAATAACTTCAGTGACACCGTCAAGACTCCAGTGAATGAAACTGTCACACTCCTGATCCGTCCAGACAAAGCTGATGATGGAGCTCAGTACAGGTGTGAAGCACAGCTGGATCTGGGAGCAGAAGGACCTCAACCTCCTCTTAAAGTCACATCTGACCCTCTCAGTGTTGAAGTACACTATAAACCACAACGCTCCAATTCAACAGAGACCATTAAAGTCAATAATGGTATGCTGAATTGTACAGTGATGGCAAACCCGGCTCCTACGTACACATGGGATCATCTGGAAGAGAAGATCAGCTCCTCAGTTCTCCAGTCCTCAGAACTCAGTCCAGGAACCTACACGTGCACCGCCACAAACACTCTGGGAAGATACAGAATAGAGTTCATCGTCAATGGTGGGACAGTGTCAGCTGACAGTTGCTCGCTAGAGATATCTCCCTCCAGAGTAGTGGTGAAGTTTGGGGATCCGGTGTCGGTCAGCTGTGTGGCCTCTCGTCCGGTGCGCGTGCTGGGATGGGAATCGATCATTGCCGCATCGCACACTCAGAATGACCTCAGCGTTCAGTGGCGGGTGGACAGTTTGACTGACTGGATTGAGGAGCCAATCTGCTATGGTGTTTTTTTCACCGCTCCCAGACAGTGTGAGGAAAAACTCAACCTCGTTCTATACAAGAAACCAGACAGTGTTTCCATAAGTTTAGTGAATCACAGCAGTCCAGTGGTGGAAGGAAGAGAGTACCAGCTGCAGTGTGAGGTGCAGAACGTCGCACCTGTCCAGTACCTCGTTTTACGGTGGTACAAAGGAAAAAATGAGGTTTACAACCACTCGTTCTCAGAGTTATCCCCTGCAACACCAGTCCAGGTGTCCTCTATCTTGCTGATTGTCCCAAACAGAGCCGATAATGCAGCTCAGTACAGGTGTGAAGCACAGCTGGAACTTGGAGCAGAAGGACCTCAACCTCCTCCAACAGTTCAGTCTGAAGTTCTCAACATTGCAGTTCAATaccCACCGGACTTCCGCAGTCCAGGGGAAGAGATACTGGACATCAGTGAGGATAGTGAAACAGCGCTGGATTGTACTGCGGAGGGTAACCCACCTCCTGTGTATGTTTGGACCTCCTCAAACCTTCAGGAGAAGGCTGATAATCAGCCGGTTTTGAGAGCTGCATCTTTGAGCCCAGGGGTATATACATGCACTGCGTCCAATATCCTGGGGAAAAAGAGCAAACAGTTTGTCATCAAGCACAAATCCAAAGgtgTTTAAGTCCAGAGACCTTGAGAAAGAACCGAAGACTTACAGTTCTAGATGGAACGTTAAGGACTTTCCGGACGTGGGCTCGGCTCTTTGTTACATTTTAGATGAATTTTTAGAGGGCTCTCTTTTCAGGGGTTATGATTTGTTAAATATGAGAGTCAAACCTACATATGTGTCAAATCTATCCTAGTAAGCTTTATTAATATTGTGCGTGTGGTCACTTTAACAgagcatttttatgtttcatgaCACACTGCGATAGCTCTGACATTGACATCAATGTTTTTGTAGATATTTACTCACccaataattataacaataataaattaatgaatatagTACAAAAGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31206 lncRNA upstream 19463 17900577 ~ 17901454 (+) False mrtfbb
TU31199 lncRNA upstream 57836 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 230629 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 269616 17650767 ~ 17651301 (+) True G20953
TU31095 lncRNA upstream 348444 17572130 ~ 17572473 (+) True G20927
TU31270 lncRNA downstream 50533 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA downstream 105905 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA downstream 105905 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA downstream 108927 18038561 ~ 18041682 (+) True G21050
TU31309 lncRNA downstream 186904 18116538 ~ 18119426 (+) True G21073
XM_043236005.1 mRNA upstream 14734 17904584 ~ 17906183 (+) False polr3k
XM_043235999.1 mRNA upstream 19426 17870177 ~ 17901491 (+) True mrtfbb
XM_043234012.1 mRNA upstream 205295 17691906 ~ 17715622 (+) False unkl
XM_043234011.1 mRNA upstream 212097 17691906 ~ 17708820 (+) True unkl
XM_043234013.1 mRNA upstream 212097 17691906 ~ 17708820 (+) False unkl
XM_043234071.1 mRNA downstream 2071 17931705 ~ 17954332 (+) True tyk2
XM_043234073.1 mRNA downstream 2082 17931716 ~ 17954332 (+) False tyk2
XM_043228458.1 mRNA downstream 25215 17954849 ~ 17970674 (+) True raver1
XM_043228451.1 mRNA downstream 25216 17954850 ~ 17970674 (+) False raver1
XM_043235392.1 mRNA downstream 50588 17980222 ~ 18026132 (+) False pde4a
TU31207 other upstream 14274 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 197494 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 725033 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 803876 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 914932 17005914 ~ 17005985 (+) True trnat-cgu_1
TU31290 other downstream 144763 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 168011 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 476332 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 513756 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 576496 18506130 ~ 18517665 (+) False G21124

Expression Profile