RNA id: TU31277


Basic Information

Item Value
RNA id TU31277
length 3243
RNA type TUCP
GC content 0.37
exon number 4
gene id si:ch211-157c3.4
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18097645 ~ 18101933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCATCTGAGTGACTATGAAAAGCTTGTAACGCCATAGAAACTGGTTTTAGTCTAACCATCAGCGAAAGCCTCGACAAGACAGGTAAGAACGCTCTCTGCTCGTGGAACTTTCCTAACTAGAGCGCTTCTGGATTTCTGGATCTTAAAAGAGATTTAAGTCTCGGAGGTAAAAATGAGCTAAAACTGTTTGACTTTGGAGGTTATATTACCTTCAggattttatttgaattgtttgtTGAATGACTAATGTTGAGCGGCTGTTGAAGGTTGTTTCTTATGATTTAATGACAGATTTATATCAAATCAGAAGACTAATAGTTTAATAGTGAGCATACATGTTATGTAGAGTGGAGTAACTGTCCTCGTCCACAGATTATAATATCTTTGTAATGCTGTACTCTgtataataagaaaatatttaggcAATTTATTCGAGGgtaaattaaatatcattaagcgacttacaaatgatgAATACAAGTGAGTCATCTTAAGGAGGCAATAAAATGAGAATTGCGAACAATACAGAGTTTCAGCATATTTTCTGGACTAGTAGGCTGCAAGGCAGAACGGGATTTAAGAAATAGCTGACGAATAgaagaagagtttaaaaaaagtagaaaagaaatatgaaaaatggatTTTGAGGTCTTGTTGTGATTTGACTGTTGCGCTTTGTTATTCCCGAACAGGAGGAGTTAAAATGCTTCATTTCATAAAAAGAAAGTGCAGTGAATGCCTCGATCAAAGCTGACCTGACCACTGAATGATGCTTTTTGAGATTGTGTGCTTTAGATATAGTAAAACAGCTGACGCATTCAGACCGCTTGACGTTTCCAGGTCACCTCCTACTGACACACACCTAAACATAATCTAAATAGCTTTACTATCATTATATCAGCgttgacatttatttgaagtatttgATGCACTGGTGTCAGACTGAAGTCCCTGTCCTTGAGGAAACAAGATCCCATTCAAGAGTATGTGTGAACAGAGAGTTGATCAAATATCACAAATGATGAACTCCGtctgtttcatttttatccCTCAATGTGGATGTTTTTTGCTCTATACATCACATAATGCcatattgctgtaaaaaaaaaaaagaattgtcaGTTTTTACTGCCTCTTATTTTCCATGAGAAGCATCAGGGTTTGATTATTCGAGTATTAGTACTCAGTCAGACATGCAGCAGAACAACATTCCTCTTCTGTCTCTGGGTGGACGTCTGCATCAATCAGTGCCTGGGCTTGTAACACTGATGTCTCTTTGTGAACTAAGGCGTTTACCATATCAcgaaaataaatgacacttgtcTTGTaacatgtttgcattttattctcTTTGGCAAAACAAGTTTGAGAAACAGGAAGCTGGCACCCACACATACACTGATGAGAAAACGAGCGTTCAGGTTATTTTATTGAGAAAGTCAGAGATGACATGCCGTCCTTTGAAGGTGGTCTGCCCATTTCAGCATCTCTGAAATACACAATCACGTTTACAGCATAGTACAGTTTCAGAGCGCCTCGCTCACAAATGACTTCTTTGGTCACAGTGTCACATTTTTGGGAGTTTTGAATAGAACCTTTCAGTTGCCGGCGCAGATTAAGTctttttaagcacattttagcATATATCCTAAAACAACATGTCACATATTAAAGCTTCTATTTTATTCCAGCAGCTTACACCCAGCCAAAGTCAGAATGAGCACTGGCGGAACCGGGGACCCACCTCCGTATGTCATACCAGTAGAGGGTGCCAAGGGCTCCAATGTCAAGGTGTATCATGTGCACACTCCGTTCAACCCATCGAGCTCCACTATCGGAGATTCTCGGACGCAGATGGAATCAGCCAGACCTGTTCAATCAACGGAAACCAAAAACAAATTTGTCAGCTACGAATCATATGAGCTGGGTCGCAATCCAGGAATGGCCACCTGCACAAACTGCCAGCAGCAGGTCCTAACCAAAGTCACCTACAAAGTAGGGGTTTACGCCTGGCTGATGTGTTTACTCCTCATCCTGTGCGGGTTTGTTTTATTCTGCTGTCTGATTCCGTTCTTCATGAAGTTTTTCAAAGACGCCTATCACACATGCCCAAATTGCAATAAAATCCTGCACATCGAAAAGAAGCGATGCTGCTAACCCCATCCCATCCCTTCCCCAATTTTAACACCACTCATGGATTGTGTGGCACCTTACGCTATATGAAGGACTGGAGGACACTTTCAGGCCAACGCAGATGTCATCTAGTACAAACCTGCTTGTATAAACTAAAGCTTTGTGATCTTTGAGAACCTTTTGGTGTTCATCTGGCTTAGtctttattgttattgcttTATATGAAGTAATACATTGCATTATCACATTATCAAATGAATATGAATACTCATTGTTTTGATTGTATATCTATAAAGGACTCATGGTTAAGGGTTCAGACGCCTGAGGAGTTTGTGGAACCAGAAATTACGTGAAGTACATACCAGTCATTTTGACATCACTGTATCACTTAAAACAGATTTTCTTAAACAAAGGGCAAACTTTAAACGGGATTCAAgatgaatttaaattatataaattaagaCAACGCAATAACTGAAATTAGCTATTTAAAACggttcttattttaatttactccaacttttttttttttttggaaaaccaGGGTTTCCACATAAAGGCTCTTGGTATTGATGGTTTGGTCCACTGGAGAAAATGAAAgcgttaaaatgaaaatttatttagAGAAACAAAATGGCTCTTTTATGGCACCGCCATACATCCAccagaaacttttatttttaaaaaaacaaaaagccaggATATATGAAGTCTTCATTTGAACGCATCATTTCCGGAGCTGAAAATGTGTAAActcataattttttataaaggaCTGTCATTTTGTAGTTGTCAAGCTCTAATTTTACCagctttaacttttttttttatttattttttttacttgtttcaaacatttggaaaaaagtTTTTGAATATTGTTGGGGGCAATGGAACTTGAAATGGTTGACAACCATCAATTCAGAACAAGatctcataaataaaaacaatagaaatcaTACTTTCAAAATACACTACACTGCTAAAGTTTACTTATTGTTTAGCAATTTATCACTTATGTAAAAAGCCTGAATCTTCATAACGTGTGTGCATGTAAATGGAGCTGTCTTACCAATAAAACTGAACGTGTTTGTGCAATATACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31270 lncRNA upstream 30327 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA upstream 55024 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA upstream 55024 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA upstream 55963 18038561 ~ 18041682 (+) True G21050
TU31215 lncRNA upstream 168029 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31309 lncRNA downstream 14606 18116538 ~ 18119426 (+) True G21073
TU31312 lncRNA downstream 56239 18158171 ~ 18158546 (+) True G21076
XR_006250480.1 lncRNA downstream 472755 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 474081 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 550429 18652361 ~ 18654715 (+) True LOC122331012
XM_043235425.1 mRNA upstream 22029 18074075 ~ 18075616 (+) True LOC122341796
XM_043231724.1 mRNA upstream 62283 18032712 ~ 18035362 (+) True dnase1
XM_043231733.1 mRNA upstream 62283 18032720 ~ 18035362 (+) False dnase1
XM_043235392.1 mRNA upstream 71513 17980222 ~ 18026132 (+) False pde4a
XM_043235393.1 mRNA upstream 71513 18013823 ~ 18026132 (+) True pde4a
XM_043235541.1 mRNA downstream 23062 18124994 ~ 18129811 (+) True c3h16orf72
XM_043235078.1 mRNA downstream 270825 18372757 ~ 18378482 (+) False atf7ip2
XM_043235080.1 mRNA downstream 270825 18372757 ~ 18378482 (+) False atf7ip2
XM_043235084.1 mRNA downstream 270825 18372757 ~ 18378482 (+) False atf7ip2
XM_043235079.1 mRNA downstream 270950 18372882 ~ 18378482 (+) True atf7ip2
TU31290 other upstream 22071 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 191002 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 374222 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 901761 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 980604 17113152 ~ 17117041 (+) False nsmce1
XR_006250035.1 other downstream 304034 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 341458 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 404198 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 580422 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 624029 18725961 ~ 18732098 (+) True G21182

Expression Profile