RNA id: TU31280


Basic Information

Item Value
RNA id TU31280
length 749
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G21049
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18035539 ~ 18042621 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattgaattttagaAAAACACTACAATAGCAGCacaatagtataaataaaatatatcatgtatataaaatatttgtatttttggttacattttaaGGGGTTCTTCTTATAGTATAATTACATATAGTATAAACACATatgtactgagtaatattaattattgacaCACTATAGAATTTGGTTAGGGTTAGTTGCTTGTAATTACGCATAATCTACCATTATTAATACAGCAAGTATATGTGATGTGTAacaaacatactgtacaatTTTTCAGTAAAGACAAAAGCTAATTAGAAATTagataaatactattaaaaaaataataaaatcaagcaTCTATTAGACATTATCTAGACACTTCCCCTTATGCATATACTGCATGCATATCTTCATGGTTAATAAAACAACGTTATGGATGAGCTATATGTCTACtatatgcatgctaaaaaaTTCCCATCCCATTTtggtttcaaaatattttaattgcaaaaaaaaagttaccctCTCATAACATAGGAGAGGGTAATGTGACAAACAGTGACACTGATACCCCCCATAAAGGCAATGTCAGGCACGTTTGCTCCTTAAGACCTCTTCTTCAGCATCTCCATGTATGCACCAAGAGATTTCTGGATGGAGTCTTTGGTGATGAAACTGACAAAGTTTGTGATGTCAGGTTCTCGGTTTGCAAGAAGTTTATCTATTGTAGGTTTTCTCATCATGGACTTAGTTATCTGACGGGCATGatct

Function

GO: NA

KEGG:

id description
ko04216 Ferroptosis
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31215 lncRNA upstream 105923 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31206 lncRNA upstream 134085 17900577 ~ 17901454 (+) False mrtfbb
TU31199 lncRNA upstream 172458 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 345251 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 384238 17650767 ~ 17651301 (+) True G20953
TU31309 lncRNA downstream 73917 18116538 ~ 18119426 (+) True G21073
TU31312 lncRNA downstream 115550 18158171 ~ 18158546 (+) True G21076
XR_006250480.1 lncRNA downstream 532066 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 533392 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 609740 18652361 ~ 18654715 (+) True LOC122331012
XM_043231724.1 mRNA upstream 177 18032712 ~ 18035362 (+) True dnase1
XM_043231733.1 mRNA upstream 177 18032720 ~ 18035362 (+) False dnase1
XM_043235392.1 mRNA upstream 9407 17980222 ~ 18026132 (+) False pde4a
XM_043235393.1 mRNA upstream 9407 18013823 ~ 18026132 (+) True pde4a
XM_043228458.1 mRNA upstream 64865 17954849 ~ 17970674 (+) True raver1
XM_043235425.1 mRNA downstream 31454 18074075 ~ 18075616 (+) True LOC122341796
XM_043232241.1 mRNA downstream 55024 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232257.1 mRNA downstream 55024 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232249.1 mRNA downstream 55060 18097681 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232263.1 mRNA downstream 55061 18097682 ~ 18101933 (+) False si:ch211-157c3.4
TU31207 other upstream 128896 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 312116 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 839655 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 918498 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 1029554 17005914 ~ 17005985 (+) True trnat-cgu_1
TU31290 other downstream 31776 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 55024 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 363345 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 400769 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 463509 18506130 ~ 18517665 (+) False G21124

Expression Profile