RNA id: TU31309


Basic Information

Item Value
RNA id TU31309
length 2777
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G21073
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18116538 ~ 18119426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTAGAGTCTGACTCAGCGTTGCACTGAAGGAAGAATCCAACGCTCTTCTGGTGAGGTCTGTCTGGGTAAAAGCGGGGCATCACCATGATCTTCCAGGGCAGATTTCTCACGAAACAGGGTGGGCTGAGAACAGACTCACTCAGCCTGCTAAAGCGCTCCACCACAAAGCGGAAAGTGGCTTCTGAGCGCCAGCTTGTGTcTCCTCCATGTCCTCCTCTGTGTTGTTGTGTCCATCCGCCATAGCCACGTTCCCATTGATGACTGGATTCTGGGGAATTCTTGGAGGATCATCTGGGTCCCcagctgaggaaaaaaaagggggaatTCCCTTGTCAACCGGTTTCACTCCGTAAGATTTCTTGTAATCTCACTCTGACTATGGTTTACAGATCCATTATGCAACAGGTAAACAAATGCACTCAGGTGcatttttcagcaaaaaacaATCATGATAATTCAGAACGTAGCTCTACTCACAGCAATTACTTTGTAACCTCAAATGgcgatttaaataataatacaattctgAAACACGGAGGAAAAGTGACAAAGCTAAATCTGCATCTATAACCATCAAAGATTCTCAAGCCCTAATAAAGCCCTCTGAAATGAGTGTTCACAACAGTCCACGGTAGTCTACAAACACTATGTAAAGATGACATTACTAAAGCATATATCACACATGTCATAGTTACAAGTGATAAACTCTAGAATTATTCTGAGCCTGAGTTTGTGAGTTAGGGGCACGCCAtcagaaaagagaaaatatgcAATGtctgtaaatgttgaaataactGATactaaccattttttttttaacaagattaTCCAAGTCACATGTACAAAAGTTAAAAACCAGGCAAAAACACACCGAAAGCACATTCTTTAATCAAACTTTAATCGACTTTGTAATTATTACTTTCCAACATAAATACAAGTTTCTTAGCAGTTAAAATGGACAAACTGTCCCTCGAACCCAGATTGGGACATAGATAATTCTGAGACCTGAAATTGGAAAGCGTTTCTTCAAACACCGCACAGGAGAAAACTACTACTGTACTgacaattttattcattttcccCACGATACCTACATCCTTTCTCTTGCTATTAGAGGCATGTACATTTCTCTTAAATAAACCTTCTGATGAATATTCAGATTCACATTTCATTGCCTGAAGGTCCAGGATCTTTAAACGATCAGAATCAGGATATCGGAGGTAACGTATAAACGGCCATTAGTGAATGAGATGCAATTTATTGCGGTTTTATTCAAAATCCATTGGATACAAGCAATACATTTTGCCTTTAACAACATTTCCCCTCCCATACTAGGCAAGCATGAGCCTGGCGTCCCACATGATTCCTATTCTTTCAGACAACAAAGCACTTGAACATGGCCACTTCTGAAGTGGAAAGTAGGACATTTGCAACAGCACGTAAGACGGcataaaatgcaagtaaaaacaaaaacaggttcTCTTCCTGTTTAAGTGGGTGGTTCTTGgttagaaaaaaagaagatgcaACGTGAACCAGACGTTCTGCCGTTCACTGAAAGGCCTGAATGAGTGAGATTAAAAACAGGCCAACCTGCATGCTTCACGGCGGCACGCAGCGCTTCGTTTGCGCATTCCTCGGCCTGTGATGTGATATGTGGTGTGATGATTGTGTGCGTGTCTTGAACGGTCTCCGGACAGCGGCATCAGAAACGCCCCCACACGTGCACTGCAGAACTTTGATGAAACGCAGCGCAAAAATTAGCGTCAGAAACGCAACGAGTGAGAAATCGCTAGCGCGTTCAACGGCCTTTCGAGGGATACCGCCGCGATCGCGGGTGTGCAcgggccaaaaaaaaaaaaaaaaaaaaaaaacagccaagcGAGCCGTAATCATTAAAAATGGCGAGCGGTACCACAGCATGACTCGTTATACAATGAAGAAGCAGAAAATCCCCGCGCGCTGTCGGCGGATCCCCACGCGCTGGCCTTGACGCACGGTCATCGCGATGCCCTAAAACGCATCAAATCTACGTTTACAACGGACGGCATACGTACTCGCCccatattaataacaataaggGTGTCGCTGAGAAAAAGACGCTACGTTAATGACTCGTTTCTGAGCTGATCCGCTCGTTTACCCCCCTCCCCCTCCATATACATATAGCCGCGCTGCTAACGTTTCCCTCCGCAAACCGAGCTCTTATTCTCAGCAAACCGTGTCATCCGACACTATCCGATGAGCAAATGAATTACTTGGTTCGCGGATCCTTTGGTGAGCCATCACGCGCCTCGGGCCGCGCAGTCACCCAGATATAAACAAACACCGACGCAAGCAGGCCTCGCAGAAACCGATCTGTGCAAAATACAGTCCACCATCTTGGAATAAAACTGCCATCCACTCCCCCTAATCGAGCCGCACAACTTCCTATGCGGAATGCGTCCGAAGCCAATACCGACATGAACACATAAATAAGACACTGCAACAGCTAAATGCAACTTAACCGATTAGGCATCGCACAGAAAGCCTGTCATCGTGTGTGTAGCTCAGCGGCGACTTATAGTTCAAAATGGTGCTGCTGTCCAGCAATCATCATCTGATGCTGTTTATTTGCCTCCACAAGCACtcaacagttaaaaaaaaaaaaaacgttggcGGGACACGAGGATTTGCTGACTGTGGAGGAAAGCCATTCAATGAAGCAGCAACTCGTTTCAGAAATGTCTAAACAAGCAGATGTTCCGAAAGAGCACGAAACGGGCAGATTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31270 lncRNA upstream 49220 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA upstream 73917 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA upstream 73917 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA upstream 74856 18038561 ~ 18041682 (+) True G21050
TU31215 lncRNA upstream 186922 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31312 lncRNA downstream 38745 18158171 ~ 18158546 (+) True G21076
XR_006250480.1 lncRNA downstream 455261 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 456587 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 532935 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 583158 18702584 ~ 18703683 (+) True G21180
XM_043232241.1 mRNA upstream 14605 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232257.1 mRNA upstream 14605 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232249.1 mRNA upstream 14605 18097681 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232263.1 mRNA upstream 14605 18097682 ~ 18101933 (+) False si:ch211-157c3.4
XM_043235425.1 mRNA upstream 40922 18074075 ~ 18075616 (+) True LOC122341796
XM_043235541.1 mRNA downstream 5568 18124994 ~ 18129811 (+) True c3h16orf72
XM_043235078.1 mRNA downstream 253331 18372757 ~ 18378482 (+) False atf7ip2
XM_043235080.1 mRNA downstream 253331 18372757 ~ 18378482 (+) False atf7ip2
XM_043235084.1 mRNA downstream 253331 18372757 ~ 18378482 (+) False atf7ip2
XM_043235079.1 mRNA downstream 253456 18372882 ~ 18378482 (+) True atf7ip2
TU31277 other upstream 14606 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 40964 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 209895 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 393115 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 920654 17163701 ~ 17195884 (+) False LOC122341316
XR_006250035.1 other downstream 286540 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 323964 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 386704 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 562928 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 606535 18725961 ~ 18732098 (+) True G21182

Expression Profile