RNA id: TU31405


Basic Information

Item Value
RNA id TU31405
length 2508
RNA type TUCP
GC content 0.48
exon number 2
gene id G21125
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18869266 ~ 18876127 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGCATTCAAGCGTCAGGTCCCTACAGAACAGGCACGTGCGTACGCAGAAAAGAACGGTATGACGTTTTTCGAAGTGAGCCCTCTCTGCAACTTCAACGTCATTGAGTCGTTTACAGAGCTGTCGCGCATCGTGCTGATGAGGCATGGCATGGAGAAGTTTTGGAGGCCCAACAGAGTTTTCAGCCTGCAGGACTTGTGCTGCCGCGCCATTGTGTCCTGCACCCCCGTGCACCTAATCGATAAGCTGCCGCTTCCTGTGGCCATCAAGAGCCATCTGAAGTCGTTCTCCATGGCCAACGGCATGAATGCCGTCATGATGCACGGACGATCCTACTCGCTAGCCAACGCCGCCGGAGGCAGCAAAGGCAACAGCCTCAAACGCTCCAAATCCATCCGGCCGCCTCAGAGTCCGCCACAGAACTGCACCAGGAACAACTGTAAGATCTCCTAGCCTCTGGGCCCAGGGGCGGGGCTTCCCTTCCCTTACATAACACTCAGGTGCACTCGGACAAACACACCAGGAAACCAACACGGGGCTGGGCCAATGACGCGACAGGTGCGCCACCTCCGGGTGTGGGGAGAGCAGGATGTGAACAAACGCTTCCTGCCGCTACGGATGGCTACATTTCTCCCCTCACATTGCTGCAGTACAGTTGACTCCTCACTCACAGCTCGTGGATAAAAACAAACCCTTGGTCAGACTCTGATTTCGTTGCAGTGGCATGTTTCCTTCCGCGCTAGCGCCCTCTACTGGAGAGTCCGTGCCGCTCTATAACCCCGCGTTGGCTGAGAGGCCTCGTTTTGAAGTTGTTTTATGGGCTTATAATACGCTTTGGTTTTGTTCTCGTTTGCTCATGCTCATTATCCTCAGCGCTCTGCATATGGcgttcctcttttttttgtttgctctttGCAGGGGCCTGTTCTCCCTGCAAATACTGAAGTACCTCGTCACATGGTCTTGCATGCTTGCCAGCGATGAGAGGGCTGATGCAAAATGACATGTAGTGCTTACGTATGAACtgatgtattaaaaatgtgatttgcaCTGCAGATTGGTGGTCTCTGAATTTGCTGGTCGTTTGCACAATGACTGTGTTGTTGAATGTGGACTGTGGGACCATCGGCGGCGCAAGCATTTCCAGGCACCTTCTGTTCATTCACAATCTTTCCTCGCTGAAGATCCAGAAAGCGGTGATGTCGTCGGGTCAGAACTGTCTTCTCTTTAAACACAGATTACAGGAAATTTCTCCTCAGGGGACAGTATCGGCAAAggggtttttttgtcttttgtttactCTGGGCTTCTCGCTTTCtctcgttttgttttttcctgcaTGTCTTGTGGGAttatttgttgcatttacaATAGTTTTAAGCTTATACTGTAATGACCTTTCTCTTCTCGTGTCCACAATTTAATACCACAACTGCCTTGCAGCCCGATTTTCTcactcaaacaaacacttttcagTACCAGTTTCCGCCCTTTACCAGCTAAAATGCCCGATAATTTCAAAGTTCTACCAGTTTTTTAGTGTTGCAGCATGAGTTCGAAAGTCAGGTTTTTGCTCGAAGCCCTTTTAATCCGCATATACAGCATGGTTTCTCCTATAGATGTATGTCAGTATGAAGGATAATGAACCCGTTCGAGCTTGCTTCTAAATATCAAGCACAAACAAAGCAAGGGGAATCTACAGCACTTCCTTTCGCTTCTCCCAGCGCATTTCTTCCAGGTCTGATGAGCCACAGTTGTCGAATAGAGGATGCCCTTCATTTCATCAAGCCTCCCAGCAGTCTTTTCCCCTTCTCTCCTCCGCCCCCTTCATCTCAGGGATGAGCCCTGGCCTCCAGCGGCACACCTGCCCGATGAAGCCCGTTTAAAGCGGGCTGAGTGACAGGCTGCCAGCAGGGGGCCTTTAAACTTTCCCAGAGGGCTGCGAGCTCTCGGTGTTTGACCTATAAGCTATTTGCTGCAGGCCTTTTGCAGTCGCTATAACCGATAGAATGATCCTGGCACATGTTGACTATGTGTTTTAGAGCAGTTGTGCGTATTGGTGTCCATCTGTTGGGTGACGTTAATGCTAAAGGGTCCACAGAAGGTGTTACTGCCCCCTCTCTTAATCTTTGAATACTCCCAAAAGGTTGTGGTAATAGAAATACTACAATGAagtgttgttttattctttttttgggCACCTGTAGGTATTAGTTTAACCCCATCGCCTGAGAGCAATGGTTGTTCTTCTCTGTTTTATGCACATTATATGGTGCAAAGAAATTCTGTGACTTAGTTAGAAGGTtccatttcaactttttttgtattgtaaagtgtttttcctctttgtAACTGAAGCCTccgattatattttaaaaacacaacaagctCATGGTTTTTAAGTCGGGCAGTGTGATGGGACCCTCCTGGTGTTGCCAAAGGAGTGGTCTCTAGTTCTGTGTGAATGGGATAAAGGGAAATGTGATTTGGTGGAGCAGTAGGAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31498 lncRNA upstream 14723 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 40013 18828686 ~ 18829253 (+) False LOC122341799
TU31450 lncRNA upstream 124681 18576013 ~ 18744585 (+) True LOC122341661
TU31441 lncRNA downstream 385860 19258917 ~ 19287649 (+) True G21151
TU31539 lncRNA downstream 431795 19304852 ~ 19305058 (+) True G21215
TU31570 lncRNA downstream 564950 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 582369 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 597942 19470999 ~ 19472687 (+) True G21269
XM_043235430.1 mRNA upstream 27506 18828665 ~ 18841760 (+) True LOC122341799
XM_043235844.1 mRNA upstream 149544 18714925 ~ 18719722 (+) True LOC122342072
XM_043233829.1 mRNA upstream 157631 18704513 ~ 18711635 (+) True retreg3
XM_043234680.1 mRNA upstream 294847 18572664 ~ 18574419 (+) True LOC122341319
XM_043235684.1 mRNA upstream 302660 18550995 ~ 18566606 (+) False LOC122341960
XM_043225694.1 mRNA downstream 82973 18956030 ~ 18959493 (+) True LOC122329464
XM_043234685.1 mRNA downstream 249266 19122323 ~ 19128648 (+) True LOC122341328
XM_043235770.1 mRNA downstream 330422 19203479 ~ 19261885 (+) True xylt1
XM_043235124.1 mRNA downstream 419744 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA downstream 419744 19292801 ~ 19297531 (+) False c3h17orf75
TU31398 other upstream 25847 18835659 ~ 18843419 (+) False G21124
TU31493 other upstream 135501 18733165 ~ 18733765 (+) True G21183
TU31491 other upstream 137168 18725961 ~ 18732098 (+) True G21182
TU31492 other upstream 139898 18725961 ~ 18729368 (+) False G21182
TU31466 other upstream 181413 18682354 ~ 18687853 (+) True G21173
TU31517 other downstream 118401 18991458 ~ 18993159 (+) False G21202
TU31519 other downstream 118401 18991458 ~ 18993234 (+) True G21202
TU31520 other downstream 118401 18991458 ~ 18993197 (+) False G21202
TU31536 other downstream 418388 19291445 ~ 19292341 (+) True G21213
TU31603 other downstream 526775 19399832 ~ 19403176 (+) False ypel3

Expression Profile