RNA id: XR_006250480.1


Basic Information

Item Value
RNA id XR_006250480.1
length 404
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122341661
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18574687 ~ 18744585 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGCGCCTGTCCAGTCACAGAGGTCCTCCACCAAGAGATCCAGCAGCACTTTCGACATACAGCAGGCGGAGAAGACACAAACAAACCCACTGTGCCACCTAAACCATCTTGCATCAGCACATCCACAGCCAAGACTGGCGGTGGAAAAGCATTGTCTCGCCTCAAGCACCTACAGCAGAGCGGATcagaaaagagcaaaacaagcaaacagaGAGAGGACTTCCTTAGAAACCAGGGTCAGCAGCAGTGAGCAGAAGTGAGCGACCCAAACCAACCTGACCTGACCGAAGCTTGtccacctcctcctctgctGTCTTCACCACCACTTCTTCATCAGCATCTCCTGACTGAAGCCCACAATCCTTCACCCAGTTCCTCCTAGTCAATCCTTTAtgcttttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 416141 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 455261 18116538 ~ 18119426 (+) True G21073
TU31270 lncRNA upstream 507369 17980167 ~ 18067318 (+) True G21045
XR_006248109.1 lncRNA downstream 72657 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 122880 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 248982 18828686 ~ 18829253 (+) False LOC122341799
TU31498 lncRNA downstream 274405 18854109 ~ 18854543 (+) True G21188
TU31441 lncRNA downstream 679213 19258917 ~ 19287649 (+) True G21151
XM_043234680.1 mRNA upstream 268 18572664 ~ 18574419 (+) True LOC122341319
XM_043235682.1 mRNA upstream 8081 18550993 ~ 18566606 (+) True LOC122341960
XM_043235683.1 mRNA upstream 8081 18550993 ~ 18566606 (+) False LOC122341960
XM_043235684.1 mRNA upstream 8081 18550995 ~ 18566606 (+) False LOC122341960
XM_043235936.1 mRNA upstream 24260 18545034 ~ 18550427 (+) True LOC122342138
XM_043233829.1 mRNA downstream 124809 18704513 ~ 18711635 (+) True retreg3
XM_043235844.1 mRNA downstream 135221 18714925 ~ 18719722 (+) True LOC122342072
XM_043235430.1 mRNA downstream 248961 18828665 ~ 18841760 (+) True LOC122341799
XM_043225694.1 mRNA downstream 376326 18956030 ~ 18959493 (+) True LOC122329464
XM_043234685.1 mRNA downstream 542619 19122323 ~ 19128648 (+) True LOC122341328
TU31399 other upstream 57022 18443390 ~ 18517665 (+) True G21124
TU31393 other upstream 57022 18506130 ~ 18517665 (+) False G21124
XR_006250035.1 other upstream 149611 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 472755 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 499113 18074397 ~ 18075574 (+) False LOC122341796
TU31466 other downstream 102650 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 146257 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 146257 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 153461 18733165 ~ 18733765 (+) True G21183
TU31398 other downstream 255955 18835659 ~ 18843419 (+) False G21124

Expression Profile