RNA id: TU31489


Basic Information

Item Value
RNA id TU31489
length 411
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G21180
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18702584 ~ 18703683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGGTCTGTACCCTCAGTGGCAAACTCCTCTACGATGCCCTCTGGGCTGATGCCATGCTCAGCACATAGCTGCTTCCAAAACTCAAACCCAATGATTCCCGCACTGTCCGAGCTGCAGGGTGATGATTTCTCGAGGCATGCTGCGCTGTTATTTCAGCTGTACGACCAGTAAAGGTGAGAGACGAGCTGCTGTCAATCAACCGCTATGTGCATTCCCGCTCCAACAGCAACGGCCTAACGTGCGCGCACTGCGCATGCGCAGACTTAGGCCACTCTATACTTTCACAATGTGAAGGCCAGCAAACGTGAACCGATCGAtacttgctgaaaatgtacctAGAGAACTCTTTATCGAAATaagtggaaaaataaatacacaaacaagcaGAAAGTACAGGCAGAAAGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248109.1 lncRNA upstream 47869 18652361 ~ 18654715 (+) True LOC122331012
XR_006250480.1 lncRNA upstream 122880 18574687 ~ 18579704 (+) False LOC122341661
TU31312 lncRNA upstream 544038 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 583158 18116538 ~ 18119426 (+) True G21073
TU31281 lncRNA upstream 659963 18035539 ~ 18042621 (+) False G21049
TU31495 lncRNA downstream 125003 18828686 ~ 18829253 (+) False LOC122341799
TU31498 lncRNA downstream 150426 18854109 ~ 18854543 (+) True G21188
TU31441 lncRNA downstream 555234 19258917 ~ 19287649 (+) True G21151
TU31539 lncRNA downstream 601169 19304852 ~ 19305058 (+) True G21215
TU31570 lncRNA downstream 734324 19438007 ~ 19440646 (+) True G21239
XM_043234680.1 mRNA upstream 128165 18572664 ~ 18574419 (+) True LOC122341319
XM_043235682.1 mRNA upstream 135978 18550993 ~ 18566606 (+) True LOC122341960
XM_043235683.1 mRNA upstream 135978 18550993 ~ 18566606 (+) False LOC122341960
XM_043235684.1 mRNA upstream 135978 18550995 ~ 18566606 (+) False LOC122341960
XM_043235936.1 mRNA upstream 152157 18545034 ~ 18550427 (+) True LOC122342138
XM_043233829.1 mRNA downstream 830 18704513 ~ 18711635 (+) True retreg3
XM_043235844.1 mRNA downstream 11242 18714925 ~ 18719722 (+) True LOC122342072
XM_043235430.1 mRNA downstream 124982 18828665 ~ 18841760 (+) True LOC122341799
XM_043225694.1 mRNA downstream 252347 18956030 ~ 18959493 (+) True LOC122329464
XM_043234685.1 mRNA downstream 418640 19122323 ~ 19128648 (+) True LOC122341328
TU31466 other upstream 14731 18682354 ~ 18687853 (+) True G21173
TU31399 other upstream 184919 18443390 ~ 18517665 (+) True G21124
TU31393 other upstream 184919 18506130 ~ 18517665 (+) False G21124
XR_006250035.1 other upstream 277508 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 600652 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31491 other downstream 22278 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 22278 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 29482 18733165 ~ 18733765 (+) True G21183
TU31398 other downstream 131976 18835659 ~ 18843419 (+) False G21124
TU31403 other downstream 165583 18869266 ~ 18876127 (+) True G21125

Expression Profile