RNA id: TU31520


Basic Information

Item Value
RNA id TU31520
length 1740
RNA type TUCP
GC content 0.40
exon number 1
gene id G21202
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18991458 ~ 18993234 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACACCTTCAGCTCCTCCTAAATCCTTTTTTTGCAACCGTCACAACTCTTTTCATGTTATCGCAATGTCACGGCATGTTTATCAAAATGAAACtgatataaaatagaaaaaatagattccaatgtttttaatagtgtaGGCTTACGTCAAACCTTTTTCTTGTACACAGGCTCTGCATTAAGCACTATATAAAGTgttgaatgaaaaatgtttctatCTGCAATGTTGCAGTATTTGACAAACACTGCATCTAATCCACTTCATCTGTAATAACGTACACAAACAGAGCAAGCGACATCACAGCAAGCAGAAAGTGTCTGACTTGATGACTTTGTTTTTAACTCATTCCCTGATTGCAAGCAGCCAAAACGAAGTTGGGCACATATTGTTTCATGCCACGCTCCATCTCTCGCCCTGCCCCAAACTCAAACAGAGCACTTTTagaaaaaactgcatttgcaCTCATTGGAAGGaatctgcacaaaaaaagagattatttgaatatgacacacttcacctttaaatgtaaaaaggctcttaacattaatatttaactatCCAGTGGCTGAATCCTCACTTACAGCCAAGATCAGAAGTAAATGAGATGTATGTGAATAGATAATTTCATACAGTTTCTCTTTTAAGAATATCAAATAATTTGCActttcacacatacagtacagatGTAACACCACTTAGACAAGCATTAGACGCTCtattgaaaaatttaaataacaatgcaTTCCCGCTTCGCACCCCGCTGGGAACGTATGAATGACAAGAGTGCTTTATTGAAATTTTAAGGTCACATCCTCCTTTGGATCACATGACAGCAATGACATTTCACTGTTTGCGCACCCCGGGCGGGACGCCACATCTCCGAGGACCAGATAACAATCAGATTGCATACAAAGTGATGTCTAGGCCAGGGTCACAGAGTCCCGGAGGAGACGTGCTCCTCAAATGAGAGAGTGCAACAAGCCACACTAGCCCAGTTTAAATATGGAGTCGTACATTTGCAATGTAGAAACATAAAaggttttgtaaaaatgttggtCCAATGCAAACTGTAGAGTCCAGCAAGCTTGCAATCTTCCTCACTAAAAATACATCTCAGTCAGATCTGAGAGGCCACCCTATCATTATTATGGATGTGAGTAATCCGGACGGGCCCGATCTGGAAAATGTGACGTCCAAATGGCGTACGTGCAAAAACGAGACTGAGCCCGGGAACTTTAGGAACCGCGTTGAAATTGCATGGATGCTACCAACATGTCCAGCCGATGTCCGCTTTTGTTCGTTTGAGCAATATATGGCGAAAGCACCAAACACTGGCTCGTATAAAAACACtagaataaagaaaatgacaagCAGCATGACTGGAATCTCAGTTCTTGAGGTCATTTAAGATCAATCGTCCAGTTAGTTCCCGATGAGCTCGATGTTTATCAAATGAACAGATGAACCTCAGGTGGAGGGGCAAGAAGGTCTTTCTACTAACGCCCGTACTAGTACCGTAAATCTTGTGTTTATAGTTGTAATATGGTTGGGATGATAGCCTTTGTAAATAAAGGCAGCTTGTTTACAAAAGGTATTGAATGAGCTGCAAAAACAGCATATAGACATTAGTCATTGActaaaaaatatctatttcatttatataaacacatgaataaatagCCAACTTACAACCCAACTCAGTTACCCAGTACCTCTGTTCAGGGGAAaggaaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31498 lncRNA upstream 136915 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 162205 18828686 ~ 18829253 (+) False LOC122341799
TU31450 lncRNA upstream 246873 18576013 ~ 18744585 (+) True LOC122341661
TU31441 lncRNA downstream 265720 19258917 ~ 19287649 (+) True G21151
TU31539 lncRNA downstream 311655 19304852 ~ 19305058 (+) True G21215
TU31570 lncRNA downstream 444810 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 462229 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 477802 19470999 ~ 19472687 (+) True G21269
XM_043225694.1 mRNA upstream 31965 18956030 ~ 18959493 (+) True LOC122329464
XM_043235430.1 mRNA upstream 149698 18828665 ~ 18841760 (+) True LOC122341799
XM_043235844.1 mRNA upstream 271736 18714925 ~ 18719722 (+) True LOC122342072
XM_043233829.1 mRNA upstream 279823 18704513 ~ 18711635 (+) True retreg3
XM_043234680.1 mRNA upstream 417039 18572664 ~ 18574419 (+) True LOC122341319
XM_043234685.1 mRNA downstream 129126 19122323 ~ 19128648 (+) True LOC122341328
XM_043235770.1 mRNA downstream 210282 19203479 ~ 19261885 (+) True xylt1
XM_043235124.1 mRNA downstream 299604 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA downstream 299604 19292801 ~ 19297531 (+) False c3h17orf75
XM_043233874.1 mRNA downstream 383778 19376975 ~ 19380629 (+) True ppp4ca
TU31403 other upstream 115331 18869266 ~ 18876127 (+) True G21125
TU31404 other upstream 118229 18869266 ~ 18873229 (+) False G21125
TU31405 other upstream 118401 18869266 ~ 18873057 (+) False G21125
TU31398 other upstream 148039 18835659 ~ 18843419 (+) False G21124
TU31493 other upstream 257693 18733165 ~ 18733765 (+) True G21183
TU31536 other downstream 298248 19291445 ~ 19292341 (+) True G21213
TU31603 other downstream 406635 19399832 ~ 19403176 (+) False ypel3
TU31597 other downstream 406674 19399871 ~ 19403176 (+) False ypel3
TU31600 other downstream 406674 19399871 ~ 19403176 (+) False ypel3
TU32077 other downstream 1071293 20064490 ~ 20068001 (+) False LOC122341338

Expression Profile