RNA id: XM_043235805.1


Basic Information

Item Value
RNA id XM_043235805.1
length 2106
RNA type mRNA
GC content 0.43
exon number 6
gene id ypel3
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19399408 ~ 19403176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAAGTCCATCAGCTGTGCTCAACAGGGGACCAGTTTACATCAAAGACTGAAATACGCTGTCctctcaaaaatattttttagatacACAAATACATGATCTTTCGGTGAAACACTGGATGTCGCACTGTGGCTTTCGTTATTCGTTTGAGCGTTTACAAAACATGCGCGTGACTTAACGTTAGTCGTCGTGCAAAGGACACAAGAACCAGAGGACACAAAAACCGCTTTCGAAGACGAAGATAGCAAAAACACGAGGGCTTTGTTGTTTCTGCTCGGCGAGACGTTAACGCAACCGTATAGTTCAGGTGACTTCAAACGCACGGGAAGAGggcctctgattggctgacctATATTCCAGACGTCGCTgtctggattctgattggtcggcTGCGGTTTGTTTTGCGCCGCATGACGTATAAGAAACTTCCtcagaaaatacagtaaacaaatcTACGGATTATATTCGGCAGCGACATTTTGAGCGCGGCGGCTTGCCTATTTCGTTGGGAATTAGGAAGCTTTCTGTTGACACCAGACGGTTTGGGCAGTAGGGCAGGTCGACAGACAGGAGGGACACAAAGGAGGCGATTGCAGGAAAAGCGCATCGCGCCGCACGTTTGTTTGGTTGAGTGCGCTCGACTAGTGAATGCTCAGGCTTCATGCCGTTGAGTTGAGCACGCTACTCTTCTGGCGACAATACTGCGAGCAGCGTTTGCCTCGAAGAAATCgttcatttttagACATGGTGAAGCAGACCAAGGCCAAAACATTCCAGGCCTATCTGGACTCCTGTCACCGCCGGTACAGCTGCGTCCACTGCCGCGCACACCTGGCCAACCATGATGACCTAATTTCTAAGTCATTTCAAGGCAGCCAAGGACGCGCCTACCTGTTCAATTCTGTGGTGAACGTAGGTTGTGGCCCAGCAGAAGAAAGGCTGCTGCTGACCGGTCTTCATGCTGTGGCTGATATTTACTGCGAGAATTGCCACACCACACTGGGTTGGAAATATGAGCAGGCATTTGAGTTAAGTCAGAAGTATAAGGAGGGGAagtttattattgaattatctCACATGATTAAGGATAATGGCTGGGACTGAAGCATTCAGCCTTTGCTTTAACTTTCTGTCACGACTTGCAGCTTCTCCAAGAACGTCATGAGAtgctttcttttatatatatatatatccatctatGATCTACATTTACTTTTGTGAGCACCTTTTTCCACACTTGTATCCTAGTGcaccagttttttttaaacgggGAAGTCTTGGGTGATTGGTTTGTGTGTGGTTGTGCCTTTTTATGTATTAGGAGGTGTGCTTGTGTGTAAGGCATGCTTGAAAAGGAACTGTGCTAAAATTTATCAACAACCTAAATTCAGtttcaaagaaatatattttttgggaTTTTGACATAAGCCCTCAAATTCTCCAAATTAAGTGCAATTGATGAGGTTTGGATGGAAGTTGGCATGATCAAAATGCCAAGATCCAAtgcctttttattaaattaattttaaagagCGAGGTATTTGTGTACGAGGTAGTGCGAGTGAAATtctactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattggggGCTTAGAGTGGATCATGtgcaatatgtgtgtatgtgagagttTGCCTAAAGGATGATTCATGCCTCCAAATCCAGTCACTTTGGTTGAATTCATCTTTTACTTTACCAAGTCACTGAGGAATCCCAACAGATGAGcatctgcgtgtgtgtgtgagagagagagagagagagcgagagcaaGCGGCAGGCTTGTTGCTGTAGAGATGTCCACAGTTGACAACTATTCTTAAGACACTTCAATTACAGCTTATAAGATGTAATTGGGATATTAATTTTCTCTGTTCgtcttgtttcttttgtttatgtGAAATGTATCAAGCATAATCTAACATTGAGCAGTATGTACAGAGACATCGATCTGATCATGTTAGAGCAGACATGTAAATGTGCTTATGATTGTGTAGCAAAGTATTTCTTTGAATGCTAAACCATTAAAGTGTATTACATTAACCTGAATTCTTTACATTAAAGTATGGGGTAAATGAAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007420 brain development biological_process
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31539 lncRNA upstream 94350 19304852 ~ 19305058 (+) True G21215
TU31441 lncRNA upstream 111759 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 544865 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 570155 18828686 ~ 18829253 (+) False LOC122341799
TU31489 lncRNA upstream 695725 18702584 ~ 18703683 (+) True G21180
TU31570 lncRNA downstream 34831 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 52250 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 67823 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 80325 19483501 ~ 19484384 (+) True G21246
TU31630 lncRNA downstream 86597 19489773 ~ 19490022 (+) True G21275
XM_043235804.1 mRNA upstream 136 19394731 ~ 19399272 (+) True gdpd3a
XM_043233870.1 mRNA upstream 6210 19385022 ~ 19393198 (+) True mapk3
XM_043233874.1 mRNA upstream 18779 19376975 ~ 19380629 (+) True ppp4ca
XM_043235124.1 mRNA upstream 101877 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA upstream 101877 19292801 ~ 19297531 (+) False c3h17orf75
XM_043235803.1 mRNA downstream 386 19403562 ~ 19408684 (+) True si:ch211-11k18.4
XM_043235802.1 mRNA downstream 386 19403562 ~ 19408684 (+) False si:ch211-11k18.4
XM_043235801.1 mRNA downstream 6415 19409591 ~ 19417891 (+) True rabep2
XM_043235342.1 mRNA downstream 40044 19443220 ~ 19445897 (+) True LOC122341749
XM_043235344.1 mRNA downstream 43995 19447171 ~ 19449662 (+) True hsd17b1
TU31536 other upstream 107067 19291445 ~ 19292341 (+) True G21213
TU31519 other upstream 406174 18991458 ~ 18993234 (+) True G21202
TU31520 other upstream 406211 18991458 ~ 18993197 (+) False G21202
TU31517 other upstream 406249 18991458 ~ 18993159 (+) False G21202
TU31405 other upstream 526351 18869266 ~ 18873057 (+) False G21125
TU32077 other downstream 661314 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 662954 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 703670 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 782391 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 784352 20187528 ~ 20188083 (+) False eftud2

Expression Profile