RNA id: TU31631


Basic Information

Item Value
RNA id TU31631
length 467
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G21276
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19490129 ~ 19490595 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCTATAGCTTGTTGAAACTTGCCAATCCGTGCATACACACGGCCAATATTGTCCAGGGCCCTGGATTTACTGTCCATCAGGTCGCTATGAAACAAAGCATAAACCAAACACTCCAGATGAATTGTAATTTGTTAACCAACCAAGAAAAAAGGTAGCTTTCCTGCTCCCATGGTTGCCTACCCTTTCTTGGCCAGCTCCAGATCCTTCTCATGATGATGGAGAGCCTTGTCTATGTTCCCAAGATCTATAAGTGCATTGCCTACATGAAACATAAGAGAAACTTTTAACAGAGTATCACATTTCTCATTCTTGTACTAtggtattataaatatattactacCTATGCAGCTGTGTAGGTTCCCAAGCACTTCTCTCTTATTGGGAAGCACTTCCCCGGACCACTCCTTCACCACCTTCATGAGTTCACGGGCCTTCTTCAGACCGATTTCCGTGTTGCCTGAACT

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0098657 import into cell biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31630 lncRNA upstream 107 19489773 ~ 19490022 (+) True G21275
TU31590 lncRNA upstream 5745 19483501 ~ 19484384 (+) True G21246
TU31624 lncRNA upstream 17442 19470999 ~ 19472687 (+) True G21269
XR_006250479.1 lncRNA upstream 30494 19455426 ~ 19459635 (+) True LOC122341657
TU31570 lncRNA upstream 49483 19438007 ~ 19440646 (+) True G21239
TU31632 lncRNA downstream 560 19491155 ~ 19491623 (+) True G21277
TU31654 lncRNA downstream 61018 19551613 ~ 19623289 (+) True G21295
TU31987 lncRNA downstream 299051 19789646 ~ 19789865 (+) True G21539
TU31988 lncRNA downstream 299983 19790578 ~ 19790781 (+) True G21540
TU31989 lncRNA downstream 300931 19791526 ~ 19792919 (+) False G21541
XM_043235343.1 mRNA upstream 35814 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 40467 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 44232 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 72238 19409591 ~ 19417891 (+) True rabep2
XM_043235802.1 mRNA upstream 81445 19403562 ~ 19408684 (+) False si:ch211-11k18.4
XM_043229689.1 mRNA downstream 18493 19509088 ~ 19511507 (+) True nkiras2
XM_043233601.1 mRNA downstream 427075 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 427611 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 427614 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 440138 19930733 ~ 19941580 (+) True pold1
TU31603 other upstream 86953 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 86953 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 86953 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 197788 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 496932 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 573895 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 575535 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 616251 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 694972 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 696933 20187528 ~ 20188083 (+) False eftud2

Expression Profile