RNA id: TU31988


Basic Information

Item Value
RNA id TU31988
length 204
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G21540
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19790578 ~ 19790781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctTGCTTTTGGATTTACAttccctttaaaaaatgtattgatgcAATAACTATATATTCGTTAATATCACAATGCAGCCATACGAATGGACTCATGCAAAGCCAACGTATTAAATCTAAGAATATATGCATCTTAACAGAGGGCTTGCCGGGAATAAACTGTAATGCTGCATTATGGATCTGGAAGTGGAAAAGGTAACCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31987 lncRNA upstream 713 19789646 ~ 19789865 (+) True G21539
TU31654 lncRNA upstream 167289 19551613 ~ 19623289 (+) True G21295
TU31632 lncRNA upstream 298955 19491155 ~ 19491623 (+) True G21277
TU31631 lncRNA upstream 299983 19490129 ~ 19490595 (+) True G21276
TU31630 lncRNA upstream 300556 19489773 ~ 19490022 (+) True G21275
TU31989 lncRNA downstream 745 19791526 ~ 19792919 (+) False G21541
TU31991 lncRNA downstream 745 19791526 ~ 19792919 (+) False G21541
TU31992 lncRNA downstream 745 19791526 ~ 19792919 (+) False G21541
TU31997 lncRNA downstream 745 19791526 ~ 19796812 (+) True G21541
TU31999 lncRNA downstream 6910 19797691 ~ 19841045 (+) True G21543
XM_043229689.1 mRNA upstream 279071 19509088 ~ 19511507 (+) True nkiras2
XM_043235343.1 mRNA upstream 336263 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 340916 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 344681 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 372687 19409591 ~ 19417891 (+) True rabep2
XM_043233601.1 mRNA downstream 126889 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 127425 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 127428 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 139952 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 196725 19987506 ~ 19998472 (+) True LOC122341334
TU31603 other upstream 387402 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 387402 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 387402 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 498237 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 797381 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 273709 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 275349 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 316065 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 394786 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 396747 20187528 ~ 20188083 (+) False eftud2

Expression Profile