RNA id: TU31991


Basic Information

Item Value
RNA id TU31991
length 1356
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G21541
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19791526 ~ 19796812 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agatccataattttttttatttcccggATAACTGAAGAAATGCATCAAGGACACAAATAGCTGATAACGGTTTCTCAAAGAATTCATTGTACAATAAAGTGAATATACATAgtgcagtgtatatatatatatatatatatatatatatacacacagtatacacaccATTAAGTGAGAGTTAAAGGTACAGATACACAAAGTGGGAAACAAACCTAGACTGACAGACGTTTAAAAAGCGGTTACACAATGAAGAAACATCATTTTCAATCATATTTTCTATCGAGGTGCTACCTTACAACACCAATGATCAGTGAATTAAAgaatgaaattataaatatgtgtgcGTATTtctatatatgtgcatgtatgtgagTCTGTGTCAATATAGTCCTGCTGGCTCTGTCCAAGATCTTTGTTGCCATCCACGTTAGCACACTAAACATCATACTGGATTACACAATAACATGGTTACACAATATCACATTTGTTCGTCCGTGTAATGTATAATCATACATATTTATCTTCTTCCATTCACTTCCCGAAAACCATTTAATAAaagagtaaaatatttttcatcgACATTAAAATACACTATATTCACGTAAACCAGAAGCTAAAAGGGATGTTATAGACCTGCATGCACTTACTTCACATCATCATCCTGCTATAAATGATACTTCTGTACCAATCCTTTCCATCAATACTACAGTGACGTTTACAGCCCTTTCGCGCTCATGAGTCAAAGATCAATATAAAGAACAAAGTATTCACCGGCCCTATGCTATGCTAACAGcgcaaaatatgttttgtactGGCTAACACCAGTGAACAAATACAAGTCAAAGGCTATTTctgttatcaaaaaaaaaaaaaaagattatgacTACCATTGAGTCATGGCCAAATGTTctcaatgaaacattttaaagagccGTAATATTCACACTTTCATTTGCAAACAAAAGAGCTTAACTGAAGGCCTCCCATTCCTATAAAATAAGCAAAGAGTTACATCTTAATCGTCGAATGAGCTCGTTTGCATACCGATACATATGCATTAAGGACGAAAGGTTAAAACTGTTGTTATGTTTGCACACTTTTGGCTATGACCGTTTAAACAAAAGGCGAAACAAATGGCtcggagagaaaaaaaaaataaaaaaagcagctgTAGCACCTAAGCGTTATGTACACAATTCCATAATCCAAgtggagacaaaaaaaaaaaaaaaaagaactaaaaagtTAGAAAACTAAGCATTTCGGCAGGTGTCCATATCTGAGACCGTGGAGGCTGCAAAGCCTTCTCTCATTGGTGAGGGATGATCGGAGCTCAACTCCATGTCCAGAGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31988 lncRNA upstream 745 19790578 ~ 19790781 (+) True G21540
TU31987 lncRNA upstream 1661 19789646 ~ 19789865 (+) True G21539
TU31654 lncRNA upstream 168237 19551613 ~ 19623289 (+) True G21295
TU31632 lncRNA upstream 299903 19491155 ~ 19491623 (+) True G21277
TU31631 lncRNA upstream 300931 19490129 ~ 19490595 (+) True G21276
TU31999 lncRNA downstream 4772 19797691 ~ 19841045 (+) True G21543
TU31980 lncRNA downstream 31802 19824721 ~ 19832447 (+) True G21534
TU32021 lncRNA downstream 80520 19873439 ~ 19876321 (+) True G21555
TU32020 lncRNA downstream 80796 19873715 ~ 19876321 (+) False G21555
TU32023 lncRNA downstream 80796 19873715 ~ 19876321 (+) False G21555
XM_043229689.1 mRNA upstream 280019 19509088 ~ 19511507 (+) True nkiras2
XM_043235343.1 mRNA upstream 337211 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 341864 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 345629 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 373635 19409591 ~ 19417891 (+) True rabep2
XM_043233601.1 mRNA downstream 124751 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 125287 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 125290 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 137814 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 194587 19987506 ~ 19998472 (+) True LOC122341334
TU31603 other upstream 388350 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 388350 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 388350 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 499185 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 798329 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 271571 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 273211 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 313927 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 392648 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 394609 20187528 ~ 20188083 (+) False eftud2

Expression Profile