RNA id: TU32018


Basic Information

Item Value
RNA id TU32018
length 1166
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G21554
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19881382 ~ 19910683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttTTATTGCTGTggttaaaaaagcttttatttcattgttcattATAACAAAAACGCCAAAGACAAATGAAGTGAGTTTGATTGAGCTTGTTACAACAGTAAGTCAGCAAGggttttaaaaaagtgatttttaagtcaaacatTTCAATTTGCAATAATTCTGCTTATAGTTGCCGTATAGTGGCAATCGTTAGATTATTTAAGGCACAGCATTATTGGTATGCTAGGTACATTTTCTTGCCTTTATTGCCCTCGTTCAGATTTTTGTCGATGAAGTTGATGCCGGCTTTTTGATACACGATCCAGGCGTTGGGGTTGATCAGCAGAACCATGTTGCTGATCTGAGACTCACATCCCTCGTTCAGGTACCACGCGTAGACATCGTTTCCACCGGCTCCAGAGTTGAGGTTAACACTGAGCTTTTTGAAGTCTTCATTCTGAAGCTTTATACTTTCCTGGAAGCTGACGGATACGTTAAGAGCAGTGAGAGCCTTGCTCTTATCGGTCGAGCGGCGATACCAGAAAAAGACGTAGTTTCCACCAGCGTCGCGATTGGTGTCTTCATCCACACGAGTGAAGCCCAGATCAAACTTTTGCTTGTCAGAAGAGAAGTCAACGGTAGCTGTGATCTCACAGATGTAGCTCGGCTTCTCTCTCTTCACCCACAGGTAGATGTAGTTTCCTCCTGCTTTACGGTTCAGATCACAACCCAGTCTCTCCCAGCCATCTTTCAGAAGAGCAGGTTCTTCTTTGGCATTTTTGCTTATCTCGAGGTTCACAATGGGGATGTCAGATTCAGTGTTGCCGTAGAAGTACCACAGAAAGATGGGATCTCCACCAGCTCCTCTATTCAGATCTCTTTCGACCAGCTCATACCCAGCATCAGCCAGACCAGATTTCATGTTGTCATTGAATGAAACCTGGATCCTGGTCACAGGTTTCAAGCCACACTCTTTCTTGTACCAAAGAAAGACCCGGTTTTTACCAGTTCCTTCATTGAGGTCAGAATTGATGAGCTGATAACCATTAGCTGCAAGTATTTCCTCCTCGTCATTAGTGGTGGAGACATTGAGCTTTGTTATTGGATGTGTTGCCATTGTTATTTTCTTCGCAGAGGAATTAGGTTcactttctTAAATGCAGGACCTGTCTTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32021 lncRNA upstream 5061 19873439 ~ 19876321 (+) True G21555
TU32020 lncRNA upstream 5061 19873715 ~ 19876321 (+) False G21555
TU32023 lncRNA upstream 5061 19873715 ~ 19876321 (+) False G21555
TU31999 lncRNA upstream 40337 19797691 ~ 19841045 (+) True G21543
TU31980 lncRNA upstream 48935 19824721 ~ 19832447 (+) True G21534
TU32062 lncRNA downstream 23076 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA downstream 42428 19948081 ~ 19951634 (+) True G21586
TU32026 lncRNA downstream 48423 19954076 ~ 19970419 (+) True G21558
TU32079 lncRNA downstream 159307 20064960 ~ 20065876 (+) False LOC122341338
XR_006250469.1 lncRNA downstream 254783 20160436 ~ 20161211 (+) True LOC122341550
XM_043229689.1 mRNA upstream 369875 19509088 ~ 19511507 (+) True nkiras2
XM_043235343.1 mRNA upstream 427067 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 431720 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 435485 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 463491 19409591 ~ 19417891 (+) True rabep2
XM_043233601.1 mRNA downstream 12017 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 12553 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 12556 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 25080 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 81853 19987506 ~ 19998472 (+) True LOC122341334
TU31603 other upstream 478206 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 478206 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 478206 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 589041 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 888185 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 158837 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 160477 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 201193 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 279914 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 281875 20187528 ~ 20188083 (+) False eftud2

Expression Profile