RNA id: TU32021


Basic Information

Item Value
RNA id TU32021
length 1936
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G21555
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19873439 ~ 19876321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcaagtcATCAGAATTATtgctgaaggatcatgtgacactaaagacaggagtattgatgctgaaaattcagctttgccatgatagaaataaaaaattctcactatgttgaaatataaattttatgtaaaaatatttcacaataccaccatttttaatcaaataaatgcagccttaatgctttttaaaaggtatGCTAGAAACTAATCGACCCATTAGGatgtaaataaagaatattcttcattagtttaatacaaaaagatcatttattttcttcaatatTTTGCCAGGCATGCCAACAATACATAAGTAGTCCGAACTGGACGCAAGTGCAAACTCTTATAAGCACAACTGgttaaaaaataatctaaattaatattacaatttattttctcacattaaatcataaaataccACAACTGtagaaaaatacttttaacattctttttttaaaataaaaatatacaattatcaAAGCCTTTTGTTTTGCTGTGCTCTGATCTCCTGAAAATACAAACATCTCCCACAACTGTCTGAAACGCTCAAACCTCAGAAGACTTGAGCGGCCCACATCACTGACGACTTGGAAAATTTACCTCTAGATACCCATGATGCCTCACTggacataaaaacatatattacagAATATATTACATGAAGGCAAGAACACCtcttgaaaacaacaacaacaacaacaacaacaacaacaacaacaacaactgtacAAGACATTTGTGCAATTACAGCAAACTTGTTATGAATAAGAACGAGGAAAAAGTGGTACAGAAATGGTGTgagaaaccaaacaaacaatggCTATGCGTGGCCATGCTATGTTGAACTACTTAAATGTGCTTGTTGGGAGTTTTGACTATAAATGTATTCCCACCAAAAGTGCTAGAACAAAAGTAGTCTCTGTGAATCAGCTCATTAAAATGCAGGTGCCACTTCTCAACAAGCAGAATGATGATAAGTCCACTGTACTGCAGAAAGCGTCAGGATCAGTTcttcataatattttacatgataCGTTAGTCCAATGAAGAGCAATGATGATTAAAACATCAGTCGATTTATCAGAACTTTCCGTGTCCTTCCTACAATGCAGCAGGCACTTCCTGGGGAGACTCCGACTTGAGTTTTGGACCGAGTACAGACAGCAGAGAAGGTTCAATTCCCTCTAAAAGTACAAACAATCCATTGAGGGGTTAAGAACATCAACCAAGAGCTTAAGAATGCTTTATTGAggggcttaaaaaaaaaaaaatctcattcagATCCATTGTAGACACTTGCACACCTTTATGGTCAGAAGGGAGGTCAACTCACATTCACAGACCAGGACGGCTCAGTGTCCCACACAAGACGACAAAAAGACTTCACAAGCACATACAAATGAGTAGACCGCTGCTGTCCAGTCCAAACTAGGCCACACCAGTCTGGCAGGTTTAGTCTTTCGGTCCCTCTGATTGATCAAGTCTATCGCTTAACAGATGAGCTCTTGTTGTATCTCGGGACGAGGTGGAAACGGTTCTGTGAAACTGAAAGTGTCCCGTCCAGTCTTCATCTCGCCCTGGCCTGGGCAGGTGACATATGAAGGGATGACGACGACAAGTTCTGGGGAAGGGATGGGGCTCTCAGGCTCCGATTCGGATTGACTGGCTTCTTGCTCATCTAGAGGGGCTTCCACAGCGTGGTGATGAGAGTCCAGCCTTAACCAAGGATGATTTAGACACTGTTCCACTGTTGCTCGTTCTGGGATTTTTGATGAGCAGGGACTGGATGAAATTTACAGCGAGGTCAGAGATGCCCTGAAAGACATCTTGAGAGTAGTCCACATTGACCTGGGAGACGTTCAGGAAAGTCTCCTGCTTTTCTTCTCCCAGAAAAGGCGACTCGCCTGTGAGCATCACGTAAATCAGCACCCCAATGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31999 lncRNA upstream 32394 19797691 ~ 19841045 (+) True G21543
TU31980 lncRNA upstream 40992 19824721 ~ 19832447 (+) True G21534
TU31997 lncRNA upstream 76627 19791526 ~ 19796812 (+) True G21541
TU31989 lncRNA upstream 80520 19791526 ~ 19792919 (+) False G21541
TU31991 lncRNA upstream 80520 19791526 ~ 19792919 (+) False G21541
TU32018 lncRNA downstream 5061 19881382 ~ 19905653 (+) False G21554
TU32016 lncRNA downstream 27265 19903586 ~ 19910683 (+) True G21554
TU32062 lncRNA downstream 52408 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA downstream 71760 19948081 ~ 19951634 (+) True G21586
TU32026 lncRNA downstream 77755 19954076 ~ 19970419 (+) True G21558
XM_043229689.1 mRNA upstream 361932 19509088 ~ 19511507 (+) True nkiras2
XM_043235343.1 mRNA upstream 419124 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 423777 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 427542 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 455548 19409591 ~ 19417891 (+) True rabep2
XM_043233601.1 mRNA downstream 41349 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 41885 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 41888 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 54412 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 111185 19987506 ~ 19998472 (+) True LOC122341334
TU31603 other upstream 470263 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 470263 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 470263 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 581098 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 880242 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 188169 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 189809 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 230525 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 309246 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 311207 20187528 ~ 20188083 (+) False eftud2

Expression Profile